Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G47810.1 | Thale cress | nucleus, peroxisome, plasma membrane | 50.9 | 56.13 |
| AT5G15670.1 | Thale cress | cytosol | 21.19 | 38.32 |
| AT1G31000.1 | Thale cress | cytosol | 31.78 | 33.7 |
| AT1G19160.1 | Thale cress | cytosol | 27.39 | 30.29 |
| AT4G11590.1 | Thale cress | cytosol | 31.01 | 30.23 |
| AT1G26515.1 | Thale cress | nucleus | 28.42 | 30.05 |
| AT5G52610.1 | Thale cress | golgi, plasma membrane | 26.87 | 29.63 |
| AT1G26510.1 | Thale cress | nucleus | 28.68 | 27.96 |
| AT5G15660.1 | Thale cress | cytosol | 30.75 | 27.17 |
Protein Annotations
| MapMan:35.1 | EntrezGene:841194 | ProteinID:AAF99803.1 | ProteinID:AEE32215.1 | ArrayExpress:AT1G47800 | EnsemblPlantsGene:AT1G47800 |
| RefSeq:AT1G47800 | TAIR:AT1G47800 | RefSeq:AT1G47800-TAIR-G | EnsemblPlants:AT1G47800.1 | TAIR:AT1G47800.1 | Unigene:At.52060 |
| InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | RefSeq:NP_175214.1 | UniProt:P0C2G5 | PFAM:PF00646 |
| PFAM:PF08268 | PFscan:PS50181 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | SMART:SM00256 | SUPFAM:SSF81383 |
| TIGRFAMs:TIGR01640 | UniParc:UPI0000163090 | SEG:seg | : | : | : |
Description
Putative F-box protein At1g47800 [Source:UniProtKB/Swiss-Prot;Acc:P0C2G5]
Coordinates
chr1:+:17601513..17602676
Molecular Weight (calculated)
44146.5 Da
IEP (calculated)
8.739
GRAVY (calculated)
-0.058
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETEKNLQS LDHIPIDVLF EILVKLPAKS VARFLCVSKV WATMIRGEVF IRSFTSYSSP QKQPRLLFAL VDCLRLYNKM LYFFSKSTLV STPLLPWDPA
101: PGPPVKPHRF GLFWRARCLR YLPKHYKSLM EELKPKPLVV EEQPDFLSRK ELRHENSSYV HGLMSFLCSG EQVIFNPSIG KSITLPTIKT SGIISQSFLG
201: YDPINAQYKV LCLTNVTRFC EHQVLTLGAQ NSSWRMIQCS TPHYCGEKSL CIDGILYYSA FTSFTTVLVR FDVRAESLEV ASKFPEGLKS SNGITLINYH
301: GKVAVVSKNY HNDHHDFNLW VLEDTKKQQW SNVLVSFHTG VTGQFHGGLE VLGTSDMGEI VFAPNHFEEF VVYFLDQKSN RIRSVLL
101: PGPPVKPHRF GLFWRARCLR YLPKHYKSLM EELKPKPLVV EEQPDFLSRK ELRHENSSYV HGLMSFLCSG EQVIFNPSIG KSITLPTIKT SGIISQSFLG
201: YDPINAQYKV LCLTNVTRFC EHQVLTLGAQ NSSWRMIQCS TPHYCGEKSL CIDGILYYSA FTSFTTVLVR FDVRAESLEV ASKFPEGLKS SNGITLINYH
301: GKVAVVSKNY HNDHHDFNLW VLEDTKKQQW SNVLVSFHTG VTGQFHGGLE VLGTSDMGEI VFAPNHFEEF VVYFLDQKSN RIRSVLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.