Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023531.1-P | Field mustard | mitochondrion | 41.31 | 50.93 |
| CDX85540 | Canola | cytosol | 37.28 | 49.33 |
| AT5G15670.1 | Thale cress | cytosol | 25.69 | 47.66 |
| AT1G26515.1 | Thale cress | nucleus | 42.07 | 45.63 |
| AT1G26510.1 | Thale cress | nucleus | 42.32 | 42.32 |
| AT1G31000.1 | Thale cress | cytosol | 37.53 | 40.82 |
| AT5G15660.1 | Thale cress | cytosol | 43.07 | 39.04 |
| AT1G47810.1 | Thale cress | nucleus, peroxisome, plasma membrane | 32.24 | 36.47 |
| AT1G19160.1 | Thale cress | cytosol | 29.47 | 33.43 |
| AT5G52610.1 | Thale cress | golgi, plasma membrane | 27.71 | 31.34 |
| AT1G47800.1 | Thale cress | cytosol | 30.23 | 31.01 |
Protein Annotations
| MapMan:35.1 | EntrezGene:826764 | ProteinID:AEE83028.1 | ArrayExpress:AT4G11590 | EnsemblPlantsGene:AT4G11590 | RefSeq:AT4G11590 |
| TAIR:AT4G11590 | RefSeq:AT4G11590-TAIR-G | EnsemblPlants:AT4G11590.1 | TAIR:AT4G11590.1 | Unigene:At.54279 | ProteinID:CAB39930.1 |
| ProteinID:CAB78202.1 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 |
| InterPro:IPR001810 | RefSeq:NP_192896.1 | PFAM:PF00646 | PFAM:PF08268 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 |
| UniProt:Q9T0C7 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI00000A31D7 | SEG:seg | : |
Description
F-box protein At4g11590 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0C7]
Coordinates
chr4:+:7008603..7009796
Molecular Weight (calculated)
45949.7 Da
IEP (calculated)
9.637
GRAVY (calculated)
-0.112
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTSQFKKSK LIENNSQSLE ILKEKNFNDV PLDVAIEIFM RLPVKSVARF LLLSKFWAEI IRSRHFITSF QVRSSLQPRL LVVFIDLNKQ WNCEDWYFFS
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.