Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G11590.1 | CDX96963 | AT2G03190.1 | 12169662 |
| AT4G11590.1 | CDY14922 | AT2G03190.1 | 12169662 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023531.1-P | Field mustard | mitochondrion | 98.33 | 91.61 |
| AT4G11590.1 | Thale cress | cytosol | 49.33 | 37.28 |
| CDY26448 | Canola | golgi, nucleus, plasma membrane | 38.0 | 33.04 |
| CDX69509 | Canola | golgi, nucleus, plasma membrane | 19.67 | 30.26 |
| CDX81594 | Canola | cytosol | 23.33 | 27.67 |
| CDX81593 | Canola | cytosol | 16.0 | 26.97 |
| CDY42412 | Canola | mitochondrion | 30.33 | 26.92 |
| CDX85577 | Canola | nucleus, plasma membrane, vacuole | 33.33 | 26.39 |
| CDY07426 | Canola | mitochondrion | 33.0 | 26.05 |
| CDY66612 | Canola | cytosol | 12.67 | 26.03 |
| CDY28066 | Canola | cytosol | 24.33 | 25.98 |
| CDX91015 | Canola | cytosol, plasma membrane, vacuole | 32.67 | 25.86 |
| CDX81596 | Canola | cytosol | 31.33 | 25.75 |
| CDY66614 | Canola | cytosol, plastid | 31.0 | 25.48 |
| CDY02702 | Canola | plastid | 31.33 | 25.41 |
| CDY02701 | Canola | mitochondrion | 31.67 | 25.2 |
| CDY66613 | Canola | mitochondrion | 28.33 | 24.29 |
| CDY45366 | Canola | cytosol | 12.33 | 21.51 |
| CDY49895 | Canola | cytosol | 1.0 | 11.11 |
Protein Annotations
| EnsemblPlants:CDX85540 | EnsemblPlantsGene:GSBRNA2T00143252001 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 |
| PFAM:PF08268 | ProteinID:CDX85540 | ProteinID:CDX85540.1 | SEG:seg | TIGRFAMs:TIGR01640 | UniParc:UPI0004EE43C1 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA02g02730D
Coordinates
chrLK031842:-:545854..546884
Molecular Weight (calculated)
34500.5 Da
IEP (calculated)
9.170
GRAVY (calculated)
-0.348
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGTWANLIT NRDFIKSFET RSCSSQPRLL VCFIGRTKPC KRQYCYFFSS SSSSTTFLSR VKCPREDPEC FPCLPHYANG LIRLGYGEKK LICNPSTGKS
101: IDLPKVKNIM SVSKSLFGYD PVNDEYKILC MTKKSPDDGV VYFVAKTGAE YLCLMKFDLR YEKWDLLTRL SSDMSRLGED CTLINYEGKV AITTTNTSGD
201: TFNVWVIDQA AREPGWLKKS FSIESWKFLS KLSIYGSTHT GEFILAPRYY SHDFSGILYN PNTNGLRKIK VDVKGSDEFK HGRRMRTMVF WEYFQSIRLL
101: IDLPKVKNIM SVSKSLFGYD PVNDEYKILC MTKKSPDDGV VYFVAKTGAE YLCLMKFDLR YEKWDLLTRL SSDMSRLGED CTLINYEGKV AITTTNTSGD
201: TFNVWVIDQA AREPGWLKKS FSIESWKFLS KLSIYGSTHT GEFILAPRYY SHDFSGILYN PNTNGLRKIK VDVKGSDEFK HGRRMRTMVF WEYFQSIRLL
001: MTTSQFKKSK LIENNSQSLE ILKEKNFNDV PLDVAIEIFM RLPVKSVARF LLLSKFWAEI IRSRHFITSF QVRSSLQPRL LVVFIDLNKQ WNCEDWYFFS
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL
Arabidopsis Description
F-box protein At4g11590 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0C7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.