CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, nucleus

Predictor Summary:

plastid 1
mitochondrion 2
plasma membrane 1
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008682.1-P	Field mustard	golgi, nucleus, plasma membrane	97.95	49.61
AT5G15670.1	Thale cress	cytosol	38.46	35.05
CDY26448	Canola	golgi, nucleus, plasma membrane	53.85	30.43
AT1G26515.1	Thale cress	nucleus	46.15	24.59
CDY28066	Canola	cytosol	33.85	23.49
CDY49895	Canola	cytosol	3.08	22.22
AT1G26510.1	Thale cress	nucleus	44.62	21.91
CDY42412	Canola	mitochondrion	37.95	21.89
AT5G15660.1	Thale cress	cytosol	46.67	20.78
CDX85540	Canola	cytosol	30.26	19.67
CDY02701	Canola	mitochondrion	37.44	19.36
CDY66614	Canola	cytosol, plastid	35.9	19.18
CDY07426	Canola	mitochondrion	36.92	18.95
CDY66613	Canola	mitochondrion	33.85	18.86
CDY02702	Canola	plastid	35.38	18.65
CDX81596	Canola	cytosol	34.87	18.63
CDX91015	Canola	cytosol, plasma membrane, vacuole	34.36	17.68
CDX85577	Canola	nucleus, plasma membrane, vacuole	33.33	17.15
CDX81594	Canola	cytosol	12.82	9.88
CDY45366	Canola	cytosol	3.59	4.07
CDX81593	Canola	cytosol	1.54	1.69
CDY66612	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX69509	EnsemblPlantsGene:GSBRNA2T00135503001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	PFAM:PF00646
PFscan:PS50181	ProteinID:CDX69509	ProteinID:CDX69509.1	SEG:seg	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI0004EDDDFC	MapMan:35.1	:	:	:

Description

BnaA10g18580D

Coordinates

chrLK031790:-:542183..542901

Molecular Weight (calculated)

22069.5 Da

IEP (calculated)

9.975

GRAVY (calculated)

-0.196

Length

195 amino acids

Sequence
(BLAST)

001: MMITRSKKNK TTFTTNPQTS SSFDGLPLDL VIEILGRFPI KSIARFLLVS KLWATIIHSR DFIESFPLGS CSSQPRFLIA FSGLDIKKGT HYAKEDWYFF
101: SSSFLSRSSC SLPPVYRSHY VKGLLCIGSG REQFIVNPTS GKSIALPRVR TRRRTTKSFF GYDQVNDEYK VLCLTEALSG LHAEEPSSQH QLNEI

Best Arabidopsis Sequence Match ( AT5G15660.1 )
(BLAST)

001: MRRRSKKIKT ENNSNPETSE ERNKFDEIPH DLVIEILERL PLKSVARFLT VSKLWATTIR SPDFRKSYRG GSSSEPRTLI VSDLNFKEPN PKLHFFRPSI
101: SSPSFLSSLT CPFTYPRHEE YYYHHVNGLI SVGYGTDQIV INPTTGKFIT LPRPKTRRKL VISFFGYDSV SDQYKVLCMT ERLRGHPEEA SSQHQVYTLG
201: AKQKSWKMIN CSIPHRPWSW NAVCINGVVY YIAKTGEGMF RRCLMRFDLK SDNLDLCTIL PEEIQTSLHD YFLINYKGKV AIPNQPNFYT YDVWVMNQEG
301: GKIEWLKNIT FTIKPRKGFV RYLFVTGTTH TGEFILAPTS YTDEFYVFHY NPDMNSFRKI RVQAPGVKFS FAQKASVVFS DHSLLRLDNL HIRGSTHTAT
401: GEFILAPRFY SDDLNVIHFN PDTNSFRSTK VEVYEDYE

Arabidopsis Description

Putative F-box protein At5g15660 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.