CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 4
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42412	Canola	mitochondrion	66.31	73.96
CDY07426	Canola	mitochondrion	72.15	71.58
CDY66613	Canola	mitochondrion	66.31	71.43
CDY66612	Canola	cytosol	26.79	69.18
CDX81594	Canola	cytosol	46.42	69.17
CDX81593	Canola	cytosol	30.77	65.17
CDY66614	Canola	cytosol, plastid	62.07	64.11
CDX81596	Canola	cytosol	61.8	63.84
CDY02702	Canola	plastid	62.33	63.51
CDY28066	Canola	cytosol	47.21	63.35
CDX69509	Canola	golgi, nucleus, plasma membrane	19.36	37.44
AT1G31000.1	Thale cress	cytosol	32.36	33.42
CDY26448	Canola	golgi, nucleus, plasma membrane	30.24	33.04
CDX85540	Canola	cytosol	25.2	31.67
CDX85577	Canola	nucleus, plasma membrane, vacuole	28.91	28.76
CDX91015	Canola	cytosol, plasma membrane, vacuole	27.06	26.91
CDY49895	Canola	cytosol	1.86	25.93
CDY45366	Canola	cytosol	11.14	24.42

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDY02701	ProteinID:CDY02701	ProteinID:CDY02701.1	InterPro:F-box-assoc_dom_typ3
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00114850001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646	PFAM:PF08268
PFscan:PS50181	PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0004EF4B8C	SEG:seg	:	:	:	:

Description

BnaC02g07340D

Coordinates

chrLK031936:-:895641..896907

Molecular Weight (calculated)

43042.3 Da

IEP (calculated)

9.628

GRAVY (calculated)

-0.081

Length

377 amino acids

Sequence
(BLAST)

001: MIRRSLCLYN KRKTNVVPLD LQIEILNRLP LKSVVRFMLV SKSWREIILS KSFIVSFPLR SLTQPLRFLL ALQDRNYQTE HISYSFFSSS SLSSSSASIP
101: TTFLSKISFP LFRASYPSYY VNGLMNMGEI ICNPCTGKTI CLPRLKIPRR ARRFFGYDPV NNQYKVSCIT PNPAEHSTQD QFQVFTLGAK PKSWRLIDCD
201: IPHIAWSYGL CIDGSVYYIA YTGAGTGAMS LMRFDLNSEK FNIFARVSED TRSLYHENNG SKTLINYHGR VAIAIPSPLL VPSIDLLIFE AGKQDYKEKS
301: IDNLPQLHLR MKGVINHTGD NIIYAPPRSR SEAVLIHHDL KGANFKTMKF EVDVKHDWFC ESIFFVGYVE SLMLPVS

Best Arabidopsis Sequence Match ( AT1G26515.1 )
(BLAST)

001: MKTRSKKTKT ENNQEKSKEK NKFDQLPLDL EIEIFRRLPL KSVARFLTLS KSCAATIRSP SFITSFRSPQ PCTLIASAPI FNCLHPFKPR VLVDHKLSFF
101: SSSSSSSSST SFLSRLTCPS SPYPRHMEYY CHYVNGLISV GYGREQIVTN PSTGRFITLP SVRTKRRLVK SFFGYDPASD QYKVLCMTER LYGHQEDPSS
201: QHQVFTLGVK KPWKMLDRTT IPDHRPWTNG VCIDGVVYYI AKTGQGMSQL SLMRYDLRDD NLNVFISLPE EIRTPSLYSD TLLNYEGKLA IAIPVTSYIF
301: DVWVMDQDGE KHEWLKKITF NIEPWQSSFD DIRIKGTTLT GEFIFAPMNN YCDDEFYVFH YKSQQE

Arabidopsis Description

Putative F-box protein At1g26515 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.