CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plasma membrane, nucleus

Predictor Summary:

plastid 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane, vacuole
Any Predictor:	plasma membrane, plastid, vacuole
BaCelLo:	plastid
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023493.1-P	Field mustard	nucleus, plasma membrane, vacuole	98.94	98.94
CDX91015	Canola	cytosol, plasma membrane, vacuole	94.99	94.99
CDY49895	Canola	cytosol	3.17	44.44
AT1G19160.1	Thale cress	cytosol	34.3	37.14
AT5G52610.1	Thale cress	golgi, plasma membrane	33.51	36.18
CDY45366	Canola	cytosol	15.3	33.72
CDY26448	Canola	golgi, nucleus, plasma membrane	30.61	33.62
CDX69509	Canola	golgi, nucleus, plasma membrane	17.15	33.33
CDX85540	Canola	cytosol	26.39	33.33
CDY42412	Canola	mitochondrion	27.44	30.77
CDY28066	Canola	cytosol	22.69	30.61
CDY02702	Canola	plastid	29.02	29.73
CDX81596	Canola	cytosol	28.5	29.59
CDY66614	Canola	cytosol, plastid	28.5	29.59
CDY66613	Canola	mitochondrion	26.91	29.14
CDY02701	Canola	mitochondrion	28.76	28.91
CDY07426	Canola	mitochondrion	27.97	27.89
CDX81594	Canola	cytosol	17.94	26.88
CDX81593	Canola	cytosol	11.61	24.72
CDY66612	Canola	cytosol	8.97	23.29

Protein Annotations

EnsemblPlants:CDX85577	EnsemblPlantsGene:GSBRNA2T00143297001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF10	PFAM:PF00646	PFAM:PF08268	ProteinID:CDX85577	ProteinID:CDX85577.1	SEG:seg
SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE0FF8	MapMan:35.1	:

Description

BnaA02g02360D

Coordinates

chrLK031842:+:726818..727957

Molecular Weight (calculated)

43211.0 Da

IEP (calculated)

8.305

GRAVY (calculated)

-0.184

Length

379 amino acids

Sequence
(BLAST)

001: MEIPRVDKIM TSQESKDGGI KGGYSHPIPL ELLFIIFLRL PAKTLARCVC VSKLWASIIR SQDFIISFQS QSRILFFIRD YYQTRFENRF FLSNQQEGTS
101: SLLSRTTCHV SDSRSRCRQP QEVNGLICCG YGTSPVIYNP TSGKSLTLPR IYLGQNVGPY VENILGYDPI NEEYKVLSMT PLPGNHSGDS IIPYKEHKVF
201: TLGSEGSWRM VECNTIHCPG TISVCINGVV YYGAYVGDGM KQRSLVRFDV RTEKFGFTKM PESVQTLSYY SSTLMNYNGK IALAYSKGYD TYELWVLEDE
301: WSKMCFSTRS WTQPCIKFNV EGITRMGEII LTPRYGGEFY VVYYNLVTKQ FRKIDIEGYK SPGGVVVSWE YVEASTMLL

Best Arabidopsis Sequence Match ( AT4G11590.1 )
(BLAST)

001: MTTSQFKKSK LIENNSQSLE ILKEKNFNDV PLDVAIEIFM RLPVKSVARF LLLSKFWAEI IRSRHFITSF QVRSSLQPRL LVVFIDLNKQ WNCEDWYFFS
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL

Arabidopsis Description

F-box protein At4g11590 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0C7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.