Subcellular Localization
min:
: max
Winner_takes_all: vacuole, plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85577 | Canola | nucleus, plasma membrane, vacuole | 98.94 | 98.94 |
| CDX91015 | Canola | cytosol, plasma membrane, vacuole | 94.46 | 94.46 |
| AT1G19160.1 | Thale cress | cytosol | 33.51 | 36.29 |
| AT5G52610.1 | Thale cress | golgi, plasma membrane | 32.98 | 35.61 |
| Bra023531.1-P | Field mustard | mitochondrion | 29.55 | 34.78 |
| Bra008682.1-P | Field mustard | golgi, nucleus, plasma membrane | 34.56 | 34.03 |
| Bra023624.1-P | Field mustard | plastid | 28.76 | 30.19 |
| Bra004091.1-P | Field mustard | mitochondrion | 28.23 | 28.16 |
| Bra023625.1-P | Field mustard | mitochondrion | 21.9 | 27.95 |
Protein Annotations
| EnsemblPlants:Bra023493.1 | EnsemblPlants:Bra023493.1-P | EnsemblPlantsGene:Bra023493 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 |
| PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | PFAM:PF00646 | PFAM:PF08268 | SEG:seg | SMART:SM00256 |
| SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI00025435DE | UniProt:M4E3Z0 | MapMan:35.1 | : |
Description
AT4G11590 (E=2e-037) | F-box family protein
Coordinates
chrA02:-:3613029..3614168
Molecular Weight (calculated)
43252.1 Da
IEP (calculated)
8.545
GRAVY (calculated)
-0.181
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIPRVDKIM TSQESKDGVI KGGYSHPIPL ELLFIIFLRL PAKTLARCVC VSKLWASIIR SQDFIISFQS QSRILFFIRD YYQTRFENRF FLSNQQEGTS
101: SLLSRTTCHV SDSRSRCRQP QEVNGLICCG YGTSPVIYNP TSGKSLTLPR IYLGQNVGPY VENILGYDPI NEEYKVLSMT PLPGNHSGDS IIPYKEHKVF
201: TLGSKSSWRT VECNTIHCPG TISVCINGVV YYGAYVGDGM KQRSLVRFDV RTEKFGFTKM PESVQTLSYY SSTLMNYNGK IALAYSKGYD TYELWVLEDE
301: WSKMCFSTRS WTQPCIKFNV EGITRMGEII LTPRYGGEFY VVYYNLVTKQ FRKIDIEGYK SPGGVVVSWE YVEASTMLL
101: SLLSRTTCHV SDSRSRCRQP QEVNGLICCG YGTSPVIYNP TSGKSLTLPR IYLGQNVGPY VENILGYDPI NEEYKVLSMT PLPGNHSGDS IIPYKEHKVF
201: TLGSKSSWRT VECNTIHCPG TISVCINGVV YYGAYVGDGM KQRSLVRFDV RTEKFGFTKM PESVQTLSYY SSTLMNYNGK IALAYSKGYD TYELWVLEDE
301: WSKMCFSTRS WTQPCIKFNV EGITRMGEII LTPRYGGEFY VVYYNLVTKQ FRKIDIEGYK SPGGVVVSWE YVEASTMLL
001: MTTSQFKKSK LIENNSQSLE ILKEKNFNDV PLDVAIEIFM RLPVKSVARF LLLSKFWAEI IRSRHFITSF QVRSSLQPRL LVVFIDLNKQ WNCEDWYFFS
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL
Arabidopsis Description
F-box protein At4g11590 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0C7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.