Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G19160.1 | Thale cress | cytosol | 58.97 | 59.14 |
| CDX85577 | Canola | nucleus, plasma membrane, vacuole | 36.18 | 33.51 |
| Bra023493.1-P | Field mustard | nucleus, plasma membrane, vacuole | 35.61 | 32.98 |
| CDX91015 | Canola | cytosol, plasma membrane, vacuole | 34.19 | 31.66 |
| AT1G31000.1 | Thale cress | cytosol | 32.76 | 31.51 |
| AT1G47810.1 | Thale cress | nucleus, peroxisome, plasma membrane | 30.2 | 30.2 |
| AT5G15670.1 | Thale cress | cytosol | 18.23 | 29.91 |
| AT4G11590.1 | Thale cress | cytosol | 31.34 | 27.71 |
| AT1G47800.1 | Thale cress | cytosol | 29.63 | 26.87 |
| AT1G26515.1 | Thale cress | nucleus | 26.78 | 25.68 |
| AT5G15660.1 | Thale cress | cytosol | 29.91 | 23.97 |
| AT1G26510.1 | Thale cress | nucleus | 25.93 | 22.92 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | EntrezGene:835338 | ProteinID:AED96241.1 | ArrayExpress:AT5G52610 | EnsemblPlantsGene:AT5G52610 |
| RefSeq:AT5G52610 | TAIR:AT5G52610 | RefSeq:AT5G52610-TAIR-G | EnsemblPlants:AT5G52610.1 | TAIR:AT5G52610.1 | Unigene:At.65670 |
| ProteinID:BAA98079.1 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | RefSeq:NP_200073.1 | PFAM:PF00646 |
| PFAM:PF08268 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | UniProt:Q9LTF6 | SMART:SM00256 | SUPFAM:SSF81383 |
| TIGRFAMs:TIGR01640 | UniParc:UPI00000A3A0D | : | : | : | : |
Description
Putative F-box protein At5g52610 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTF6]
Coordinates
chr5:-:21346423..21347478
Molecular Weight (calculated)
40329.1 Da
IEP (calculated)
8.696
GRAVY (calculated)
0.080
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MISEDLLVEI LLRLPVKPLA RCLCVCKLWA TIIRSRYFIN LYQSRSSTRQ PYVMFALRDI FTSCRWHFFS SSQPSLVTKA TCSANNSSHT PDCVNGLICV
101: EYMSQLWISN PATRKGVLVP QSAPHQKFRK WYMGYDPINY QYKVLFFSKQ YLLSPYKLEV FTLEGQGSWK MIEVENIPSP STRGICIDGV VYYGAQTAHG
201: LRLVRFYVAT EKFGDFIEIP VGASNVYDMN FGYSKLVNYQ GKLALLAAKS MSMYDLWVLE DAGKQEWSKV SIVLTREMFS YDLVWLGAVG FVAGSDELIV
301: TAHDRFYQIY LVYVDLKMKR SREVWLGGIR CSDRSSLVLT FTDYVESIML L
101: EYMSQLWISN PATRKGVLVP QSAPHQKFRK WYMGYDPINY QYKVLFFSKQ YLLSPYKLEV FTLEGQGSWK MIEVENIPSP STRGICIDGV VYYGAQTAHG
201: LRLVRFYVAT EKFGDFIEIP VGASNVYDMN FGYSKLVNYQ GKLALLAAKS MSMYDLWVLE DAGKQEWSKV SIVLTREMFS YDLVWLGAVG FVAGSDELIV
301: TAHDRFYQIY LVYVDLKMKR SREVWLGGIR CSDRSSLVLT FTDYVESIML L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.