Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G47800.1 | Thale cress | cytosol | 56.13 | 50.9 |
| AT5G15670.1 | Thale cress | cytosol | 22.79 | 37.38 |
| AT1G31000.1 | Thale cress | cytosol | 35.04 | 33.7 |
| AT4G11590.1 | Thale cress | cytosol | 36.47 | 32.24 |
| AT1G26515.1 | Thale cress | nucleus | 32.76 | 31.42 |
| AT1G19160.1 | Thale cress | cytosol | 31.05 | 31.14 |
| AT5G52610.1 | Thale cress | golgi, plasma membrane | 30.2 | 30.2 |
| AT1G26510.1 | Thale cress | nucleus | 29.91 | 26.45 |
| AT5G15660.1 | Thale cress | cytosol | 32.76 | 26.26 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | EntrezGene:841195 | ProteinID:AAF99803.1 | ProteinID:AEE32216.1 | ArrayExpress:AT1G47810 |
| EnsemblPlantsGene:AT1G47810 | RefSeq:AT1G47810 | TAIR:AT1G47810 | RefSeq:AT1G47810-TAIR-G | EnsemblPlants:AT1G47810.1 | TAIR:AT1G47810.1 |
| Unigene:At.52061 | EMBL:DQ056486 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | RefSeq:NP_175215.1 |
| PFAM:PF00646 | PFAM:PF08268 | PFscan:PS50181 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF10 | UniProt:Q4PT00 |
| SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0000163091 | SEG:seg | : |
Description
F-box protein At1g47810 [Source:UniProtKB/Swiss-Prot;Acc:Q4PT00]
Coordinates
chr1:+:17603504..17604559
Molecular Weight (calculated)
40113.3 Da
IEP (calculated)
8.455
GRAVY (calculated)
-0.150
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTEKSLQS LDPIPVDVLF EIFLNLPAKF LARFVCVSKL WAKIIRNQDF IRSFSFRSFR ENKQHRLLFA FKNQIKGYQE NWYFFSKSTH VSTPLYEPNS
101: LVLPDQNINK FEALVGEEPP DFESSTVCHL KKMRYQNPSY VHGLISFLYG EEQIICNPSI GKSINLPTLG SSETIIGSFL GYDPIHAQYK VLCLNKSSLQ
201: FCGHQVLTLG AQNCSWRMIQ CPTPHYPGTT SVCIDGVLYY SASRGFTMHE PLNLVRFDLR TESLEIASVF PEDFKSSVKP SLINYRGKVA VFSKYFCGDF
301: GLWVLEDAKK QQWSKEQRIS IRRGVIGRLP QGLQILGTSD MGEVIFAPNY F
101: LVLPDQNINK FEALVGEEPP DFESSTVCHL KKMRYQNPSY VHGLISFLYG EEQIICNPSI GKSINLPTLG SSETIIGSFL GYDPIHAQYK VLCLNKSSLQ
201: FCGHQVLTLG AQNCSWRMIQ CPTPHYPGTT SVCIDGVLYY SASRGFTMHE PLNLVRFDLR TESLEIASVF PEDFKSSVKP SLINYRGKVA VFSKYFCGDF
301: GLWVLEDAKK QQWSKEQRIS IRRGVIGRLP QGLQILGTSD MGEVIFAPNY F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.