CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, golgi, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023625.1-P	Field mustard	mitochondrion	71.3	81.14
CDY02701	Canola	mitochondrion	73.96	66.31
CDY07426	Canola	mitochondrion	70.41	62.63
CDY66613	Canola	mitochondrion	64.2	62.0
CDY28066	Canola	cytosol	48.52	58.36
CDY66614	Canola	cytosol, plastid	63.02	58.36
CDY02702	Canola	plastid	63.61	58.11
CDX81594	Canola	cytosol	43.49	58.1
CDX81596	Canola	cytosol	62.72	58.08
CDX81593	Canola	cytosol	26.33	50.0
CDY66612	Canola	cytosol	21.01	48.63
CDX69509	Canola	golgi, nucleus, plasma membrane	21.89	37.95
AT1G31000.1	Thale cress	cytosol	34.91	32.33
CDY26448	Canola	golgi, nucleus, plasma membrane	32.25	31.59
CDX85540	Canola	cytosol	26.92	30.33
CDY49895	Canola	cytosol	2.37	29.63
CDX85577	Canola	nucleus, plasma membrane, vacuole	30.77	27.44
CDX91015	Canola	cytosol, plasma membrane, vacuole	29.29	26.12
CDY45366	Canola	cytosol	10.06	19.77

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078HX58	EnsemblPlants:CDY42412	ProteinID:CDY42412	ProteinID:CDY42412.1
InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00074712001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF08268	PFscan:PS50181
PANTHER:PTHR31790	PANTHER:PTHR31790:SF10	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EF1A24
SEG:seg	:	:	:	:	:

Description

BnaA08g00020DBnaA08g00020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HX58]

Coordinates

chrLK032523:-:274459..275723

Molecular Weight (calculated)

39088.3 Da

IEP (calculated)

9.960

GRAVY (calculated)

-0.212

Length

338 amino acids

Sequence
(BLAST)

001: MRRSLRLCNK RKTNVVPLDL QIEILNRLPA KSLVRFMVVS NSWQEIIRSH TFIRSFPFRS ILTQSQPLRF LLALHDKDDQ TGRLSCSFFS SSSSLSPSST
101: SISTTFLSKI KFPLRCRASY RSYYVNGLMN MGEIICNPCT GKTISLPRDK RPAFSTRFFG YDPVNNQYKV LCITPHRLST QHDFQVFTLG AKPKSWRFID
201: CDIPHRTWSN GLCIDGSVYY IAYTGAVTMS LMRFDLNSEK FDIFARVSEE MKAFWKQDYK EKSFDNLPQL HLRVKSVINR AGGDIIFAPH YSRSVATVIH
301: HDLKGTSFKM MKFEVDVKGD WFTESNCFVD YVESLMLL

Best Arabidopsis Sequence Match ( AT4G11590.1 )
(BLAST)

001: MTTSQFKKSK LIENNSQSLE ILKEKNFNDV PLDVAIEIFM RLPVKSVARF LLLSKFWAEI IRSRHFITSF QVRSSLQPRL LVVFIDLNKQ WNCEDWYFFS
101: LSSSTTSYLS RVTCPFPDYV HYSHYVNGLI SHGYGLEKFI TNPSTGKSTV LGRVQTNSKV AQCFLGYDPV NDEYKLLVLC MKEKMQRHDG RTRILQLSSQ
201: HQVFPLGVKK KPWRMIDYTT PHGPVLNSVC IDGVLYYVAF TGEDLSQLSL MRFDLGSEKL DLFTSLPADF PAAFLHGFTL MRYKGKVALA TKTLFIGIEV
301: WVLDQQAEIH GWLKKSFSIK GVRRWLFCDL FITGTTHTGE FILAPRFYSN SFYVIYYNPD TKSLRKTKVE VHGGYDFKHR ETKAMVFPDY VETVRLL

Arabidopsis Description

F-box protein At4g11590 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0C7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.