Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77477 | Canola | cytosol | 97.3 | 97.3 |
| AT3G23880.1 | Thale cress | cytosol | 81.62 | 82.97 |
| CDX85142 | Canola | cytosol | 94.32 | 42.51 |
| PGSC0003DMT400096925 | Potato | cytosol | 20.0 | 29.37 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 29.46 | 28.46 |
| Solyc09g083230.1.1 | Tomato | cytosol, peroxisome, plastid | 28.92 | 28.08 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 24.59 | 27.74 |
| PGSC0003DMT400009785 | Potato | cytosol | 28.11 | 27.44 |
| KRH20939 | Soybean | cytosol, mitochondrion | 29.73 | 27.09 |
| Solyc02g033040.2.1 | Tomato | nucleus | 24.86 | 27.06 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 24.32 | 26.87 |
| PGSC0003DMT400009709 | Potato | cytosol | 27.3 | 26.72 |
| PGSC0003DMT400076275 | Potato | nucleus | 28.92 | 26.62 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 22.7 | 26.33 |
| PGSC0003DMT400059327 | Potato | cytosol | 26.22 | 26.29 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 26.22 | 26.22 |
| PGSC0003DMT400095263 | Potato | cytosol | 19.19 | 26.1 |
| PGSC0003DMT400080382 | Potato | golgi | 26.49 | 26.06 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 28.11 | 26.0 |
| PGSC0003DMT400080292 | Potato | cytosol | 13.78 | 25.76 |
| PGSC0003DMT400067303 | Potato | extracellular | 25.41 | 25.68 |
| PGSC0003DMT400096151 | Potato | cytosol | 27.57 | 25.63 |
| PGSC0003DMT400080369 | Potato | nucleus | 27.57 | 25.56 |
| Solyc05g007400.1.1 | Tomato | cytosol | 26.22 | 25.53 |
| Solyc01g067030.2.1 | Tomato | extracellular | 25.41 | 25.47 |
| Solyc09g091710.1.1 | Tomato | nucleus | 27.57 | 25.37 |
| Solyc10g075010.1.1 | Tomato | extracellular | 24.32 | 25.35 |
| PGSC0003DMT400085500 | Potato | cytosol | 26.22 | 25.33 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 25.41 | 25.27 |
| PGSC0003DMT400055337 | Potato | plastid | 27.57 | 25.12 |
| PGSC0003DMT400034123 | Potato | golgi | 24.86 | 25.07 |
| Solyc05g007530.1.1 | Tomato | cytosol | 25.14 | 25.0 |
| PGSC0003DMT400090382 | Potato | cytosol | 25.95 | 25.0 |
| PGSC0003DMT400093810 | Potato | plastid | 18.92 | 25.0 |
| KRH11341 | Soybean | cytosol, plastid | 26.22 | 24.68 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 25.14 | 24.6 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 23.78 | 24.51 |
| Solyc09g072930.1.1 | Tomato | cytosol, plasma membrane | 25.41 | 24.35 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 15.95 | 24.28 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 18.11 | 24.28 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 21.35 | 24.09 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 22.97 | 24.08 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 25.41 | 23.98 |
| Solyc09g091220.1.1 | Tomato | cytosol | 25.68 | 23.87 |
| PGSC0003DMT400092235 | Potato | cytosol | 21.35 | 23.87 |
| PGSC0003DMT400016504 | Potato | cytosol | 24.86 | 23.83 |
| Solyc10g008450.1.1 | Tomato | extracellular, vacuole | 22.43 | 23.78 |
| Solyc09g091690.1.1 | Tomato | cytosol | 24.86 | 23.71 |
| PGSC0003DMT400053926 | Potato | cytosol | 16.76 | 23.57 |
| PGSC0003DMT400090333 | Potato | cytosol | 19.73 | 23.55 |
| PGSC0003DMT400059329 | Potato | vacuole | 25.41 | 23.44 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 24.86 | 23.41 |
| PGSC0003DMT400076216 | Potato | cytosol | 24.59 | 23.39 |
| PGSC0003DMT400094202 | Potato | cytosol | 18.11 | 23.34 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 23.24 | 23.24 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 24.86 | 23.17 |
| Solyc10g068340.1.1 | Tomato | cytosol | 16.22 | 23.08 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 22.97 | 22.97 |
| Solyc05g007360.1.1 | Tomato | extracellular | 24.86 | 22.94 |
| Solyc01g067010.2.1 | Tomato | cytosol, extracellular, plasma membrane | 22.97 | 22.91 |
| PGSC0003DMT400076284 | Potato | cytosol | 26.22 | 22.88 |
| Solyc10g052710.1.1 | Tomato | cytosol | 23.51 | 22.77 |
| PGSC0003DMT400059330 | Potato | extracellular | 23.24 | 22.75 |
| Solyc05g005110.1.1 | Tomato | mitochondrion, plastid | 24.32 | 22.22 |
| Solyc07g052580.1.1 | Tomato | cytosol, peroxisome, plastid | 25.68 | 21.94 |
| PGSC0003DMT400025788 | Potato | cytosol | 23.24 | 21.94 |
| PGSC0003DMT400031977 | Potato | cytosol | 23.51 | 21.91 |
| Bra001187.1-P | Field mustard | cytosol | 15.68 | 21.89 |
| Solyc05g007370.1.1 | Tomato | golgi, mitochondrion, plasma membrane | 22.97 | 21.85 |
| PGSC0003DMT400097507 | Potato | cytosol | 14.05 | 21.85 |
| KRH72048 | Soybean | cytosol | 20.81 | 21.81 |
| Solyc05g007380.1.1 | Tomato | endoplasmic reticulum, golgi | 23.78 | 21.78 |
| PGSC0003DMT400076274 | Potato | cytosol | 22.7 | 21.71 |
| PGSC0003DMT400076282 | Potato | nucleus | 9.19 | 21.52 |
| Solyc09g072910.1.1 | Tomato | plasma membrane | 24.86 | 21.05 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 27.84 | 20.93 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 23.51 | 20.81 |
| PGSC0003DMT400088797 | Potato | cytosol | 13.51 | 20.33 |
| PGSC0003DMT400059334 | Potato | plastid | 19.73 | 20.28 |
| Bra006310.1-P | Field mustard | cytosol | 20.0 | 20.05 |
| Bra020847.1-P | Field mustard | cytosol | 21.89 | 20.05 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 9.73 | 20.0 |
| PGSC0003DMT400030295 | Potato | cytosol | 10.54 | 19.7 |
| Bra006309.1-P | Field mustard | cytosol | 21.08 | 19.7 |
| Bra018485.1-P | Field mustard | cytosol | 21.62 | 19.46 |
| PGSC0003DMT400045556 | Potato | cytosol | 24.05 | 19.26 |
| Bra006311.1-P | Field mustard | cytosol | 20.27 | 19.13 |
| Bra006312.1-P | Field mustard | cytosol | 19.46 | 18.0 |
| PGSC0003DMT400080293 | Potato | nucleus | 10.27 | 14.96 |
| Bra006313.1-P | Field mustard | plasma membrane | 20.0 | 8.72 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | EnsemblPlantsGene:Bra014991 | EnsemblPlants:Bra014991.1 | EnsemblPlants:Bra014991.1-P | InterPro:F-box-assoc_dom_typ3 |
| InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR001810 | UniProt:M4DER9 |
| PFAM:PF00646 | PFAM:PF08268 | PFscan:PS50181 | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 | SMART:SM00256 |
| SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0002540D83 | SEG:seg | : | : |
Description
AT3G23880 (E=8e-169) | F-box family protein
Coordinates
chrA07:+:4515975..4517087
Molecular Weight (calculated)
42047.7 Da
IEP (calculated)
8.507
GRAVY (calculated)
-0.200
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEPIIESFF FSPTNLPPEM MEEILLRLPV KSLKRFKCVC TSWRSLISET LFTLKHALML DASKATTYKK SPYGVITTSR YHLKSCCVHS LYNEPMANVF
101: EHDGELLGRD YYQVVGTCNG LVCFHVDYNK SFYLWNPTIK LQQRLRGSDL ETGDEVVVNY GFGYDESEDD YKIVALLQQR QQLKTEAMIY STRQKLWRRR
201: SSSNTCFPSG VVLANKSRSG IYINGTLNWA ATHSSSSVST IISYDMSRDA FKELHGPGSC KRGCFTMTLG DLRGCLSMVC YCKGAKADVW VMKEFGERDS
301: WSKLLSIPGL TEFVRPLWIS RGLVVLLEFR SGLALYNCAN GKFQYPVQDS LSGCRDAKVY VKTLVSPRDL
101: EHDGELLGRD YYQVVGTCNG LVCFHVDYNK SFYLWNPTIK LQQRLRGSDL ETGDEVVVNY GFGYDESEDD YKIVALLQQR QQLKTEAMIY STRQKLWRRR
201: SSSNTCFPSG VVLANKSRSG IYINGTLNWA ATHSSSSVST IISYDMSRDA FKELHGPGSC KRGCFTMTLG DLRGCLSMVC YCKGAKADVW VMKEFGERDS
301: WSKLLSIPGL TEFVRPLWIS RGLVVLLEFR SGLALYNCAN GKFQYPVQDS LSGCRDAKVY VKTLVSPRDL
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.