Factsheet for PGSC0003DMT400009708

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009785	Potato	cytosol	79.57	68.87
PGSC0003DMT400009709	Potato	cytosol	73.48	63.76
Solyc09g072930.1.1	Tomato	cytosol, plasma membrane	67.68	57.51
PGSC0003DMT400080382	Potato	golgi	55.49	48.4
PGSC0003DMT400095263	Potato	cytosol	36.59	44.12
PGSC0003DMT400080239	Potato	cytosol, plastid	42.38	43.57
PGSC0003DMT400076275	Potato	nucleus	47.87	39.05
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	43.9	38.1
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	46.04	37.75
PGSC0003DMT400080369	Potato	nucleus	45.43	37.34
PGSC0003DMT400016504	Potato	cytosol	43.9	37.31
PGSC0003DMT400055337	Potato	plastid	45.73	36.95
PGSC0003DMT400096925	Potato	cytosol	28.35	36.9
PGSC0003DMT400006240	Potato	mitochondrion	36.89	36.89
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	39.63	36.83
PGSC0003DMT400035091	Potato	mitochondrion	43.6	36.48
PGSC0003DMT400092235	Potato	cytosol	35.98	35.65
PGSC0003DMT400085500	Potato	cytosol	41.16	35.25
PGSC0003DMT400059327	Potato	cytosol	39.02	34.69
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	39.33	34.68
PGSC0003DMT400076284	Potato	cytosol	44.51	34.43
PGSC0003DMT400031977	Potato	cytosol	41.46	34.26
PGSC0003DMT400094202	Potato	cytosol	29.27	33.45
PGSC0003DMT400096151	Potato	cytosol	40.24	33.17
PGSC0003DMT400059330	Potato	extracellular	37.8	32.8
PGSC0003DMT400067303	Potato	extracellular	36.59	32.79
PGSC0003DMT400090333	Potato	cytosol	30.79	32.58
PGSC0003DMT400090382	Potato	cytosol	37.8	32.29
PGSC0003DMT400045556	Potato	cytosol	45.43	32.25
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	26.22	31.16
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	31.71	31.04
PGSC0003DMT400015653	Potato	cytosol, plastid	45.43	30.28
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	33.84	30.0
KRH11340	Soybean	cytosol, peroxisome, plastid	34.76	29.77
KRH20939	Soybean	cytosol, mitochondrion	35.67	28.82
PGSC0003DMT400080292	Potato	cytosol	17.38	28.79
PGSC0003DMT400059329	Potato	vacuole	34.45	28.18
PGSC0003DMT400093810	Potato	plastid	23.48	27.5
KRH11341	Soybean	cytosol, plastid	32.93	27.48
PGSC0003DMT400076274	Potato	cytosol	32.32	27.39
KRH35044	Soybean	cytosol, extracellular, golgi	29.88	27.3
PGSC0003DMT400034123	Potato	golgi	30.49	27.25
PGSC0003DMT400025788	Potato	cytosol	32.32	27.04
KRH72048	Soybean	cytosol	28.96	26.91
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	30.18	26.76
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	30.18	26.76
PGSC0003DMT400076216	Potato	cytosol	31.71	26.74
PGSC0003DMT400053926	Potato	cytosol	21.34	26.62
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	15.24	26.45
PGSC0003DMT400053922	Potato	extracellular, golgi	32.93	25.84
PGSC0003DMT400097507	Potato	cytosol	18.29	25.21
AT3G23880.1	Thale cress	cytosol	27.74	25.0
PGSC0003DMT400088797	Potato	cytosol	18.6	24.8
PGSC0003DMT400076282	Potato	nucleus	11.89	24.68
Bra014991.1-P	Field mustard	cytosol	27.74	24.59
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	13.41	24.44
PGSC0003DMT400046369	Potato	cytosol	29.88	24.26
PGSC0003DMT400012000	Potato	plastid	26.22	23.24
VIT_18s0041g01090.t01	Wine grape	cytosol	28.05	23.17
PGSC0003DMT400059334	Potato	plastid	25.3	23.06
KRH35047	Soybean	cytosol, peroxisome, plastid	27.44	22.9
PGSC0003DMT400016099	Potato	cytosol	25.0	22.28
PGSC0003DMT400058829	Potato	cytosol	24.7	22.25
VIT_18s0041g01100.t01	Wine grape	cytosol	16.46	22.22
PGSC0003DMT400016057	Potato	cytosol	25.0	21.98
PGSC0003DMT400016096	Potato	cytosol	13.72	21.74
PGSC0003DMT400080293	Potato	nucleus	16.46	21.26
PGSC0003DMT400030295	Potato	cytosol	10.67	17.68

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	UniProt:M0ZWT6	PFAM:PF00646
PFAM:PF07734	EnsemblPlantsGene:PGSC0003DMG400003796	PGSC:PGSC0003DMG400003796	EnsemblPlants:PGSC0003DMT400009708	PFscan:PS50181	PANTHER:PTHR44355
PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000295E99E	SEG:seg

Description

F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003796]

Coordinates

chr9:+:50930115..50932391

Molecular Weight (calculated)

38084.2 Da

IEP (calculated)

8.629

GRAVY (calculated)

-0.144

Length

328 amino acids

Sequence
(BLAST)

001: MENSIPFLPA ELVNEILSRL PVKSLLKFRC ASKSWFALIS SPEFVKTHLS LNDNNNEYTR HKVMMFERTV CNFRDCSVSS LFNNSFIKAN DLDYPRQVPC
101: GVYIVGSVNG LICLVSREKE LFLWNPSIRK YKKLPNPKTK TTLAYFPRVY GFGYDKFHDD YNVVVIFIYN NISLHIEVKR NSLKSDSWRT VDNCPSIVPL
201: QQPGRFVNGK LHWITIIDPK LCIKQSIISF DLADGKWGEI ELPCYWKRGR GAVLSLGVLG SNLSVCCDCD KTNMLDVWLM KEYEIKESWT KMFTIKIPED
301: QSVYGYLGQI RYTWQVEVKF WLCLDQIS

Best Arabidopsis Sequence Match ( AT4G22390.2 )
(BLAST)

001: MAECPTDLIN EMFLRLRATT LVKCRVLSKP CFSLIDSPEF VSSHLRRRLE TGEHLMILLR GPRLLRTVEL DSPENVSDIP HPLQAGGFTE VFGSFNGVIG
101: LCNSPVDLAI FNPSTRKIHR LPIEPIDFPE RDITREYVFY GLGYDSVGDD FKVVRIVQCK LKEGKKKFPC PVEVKVFSLK KNSWKRVCLM FEFQILWISY
201: YYHLLPRRGY GVVVNNHLHW ILPRRQGVIA FNAIIKYDLA SDDIGVLSFP QELYIEDNMD IGVLDGCVCL MCYDEYSHVD VWVLKEYEDY KSWTKLYRVP
301: KPESVESVEF IRPLICSKDR SKILLEINNA ANLMWFDLES QSLTTAGIEC DSSFTADILV SSLVLGCKGD PTQAQRSKDQ KMMPKSTKRD GFLSKGFKLK
401: L

Arabidopsis Description

F-box protein At4g22390 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.