Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 36.78 | 60.08 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 32.49 | 33.68 |
| KRH20939 | Soybean | cytosol, mitochondrion | 33.0 | 32.27 |
| Solyc09g091710.1.1 | Tomato | nucleus | 30.73 | 30.35 |
| PGSC0003DMT400076275 | Potato | nucleus | 30.48 | 30.1 |
| KRH11341 | Soybean | cytosol, plastid | 29.47 | 29.77 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 24.18 | 29.27 |
| PGSC0003DMT400034123 | Potato | golgi | 26.7 | 28.88 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 24.18 | 28.66 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 26.45 | 28.38 |
| PGSC0003DMT400080382 | Potato | golgi | 26.7 | 28.19 |
| PGSC0003DMT400096925 | Potato | cytosol | 17.88 | 28.17 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 26.2 | 28.11 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 23.17 | 28.05 |
| PGSC0003DMT400009709 | Potato | cytosol | 26.7 | 28.04 |
| Solyc10g052710.1.1 | Tomato | cytosol | 26.95 | 28.01 |
| Solyc01g067030.2.1 | Tomato | extracellular | 25.94 | 27.91 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 25.94 | 27.84 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 26.2 | 27.51 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 27.71 | 27.5 |
| VIT_05s0124g00230.t01 | Wine grape | cytosol | 24.94 | 27.5 |
| PGSC0003DMT400009785 | Potato | cytosol | 25.94 | 27.18 |
| PGSC0003DMT400080369 | Potato | nucleus | 27.2 | 27.07 |
| Solyc02g033040.2.1 | Tomato | nucleus | 23.17 | 27.06 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 21.66 | 26.96 |
| PGSC0003DMT400016504 | Potato | cytosol | 26.2 | 26.94 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 25.19 | 26.88 |
| Solyc09g091690.1.1 | Tomato | cytosol | 26.2 | 26.8 |
| Solyc09g083230.1.1 | Tomato | cytosol, peroxisome, plastid | 25.69 | 26.77 |
| AT3G23880.1 | Thale cress | cytosol | 24.43 | 26.65 |
| Solyc10g008450.1.1 | Tomato | extracellular, vacuole | 23.43 | 26.65 |
| PGSC0003DMT400092235 | Potato | cytosol | 22.17 | 26.59 |
| PGSC0003DMT400095263 | Potato | cytosol | 18.14 | 26.47 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 23.43 | 26.35 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 25.94 | 26.28 |
| PGSC0003DMT400076216 | Potato | cytosol | 25.69 | 26.22 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 23.68 | 26.18 |
| Solyc09g072930.1.1 | Tomato | cytosol, plasma membrane | 25.44 | 26.17 |
| Solyc01g067010.2.1 | Tomato | cytosol, extracellular, plasma membrane | 24.43 | 26.15 |
| PGSC0003DMT400085500 | Potato | cytosol | 25.19 | 26.11 |
| PGSC0003DMT400055337 | Potato | plastid | 26.7 | 26.11 |
| Solyc05g007530.1.1 | Tomato | cytosol | 24.43 | 26.08 |
| PGSC0003DMT400031977 | Potato | cytosol | 25.94 | 25.94 |
| Solyc05g005110.1.1 | Tomato | mitochondrion, plastid | 26.45 | 25.93 |
| Solyc09g091220.1.1 | Tomato | cytosol | 25.94 | 25.88 |
| PGSC0003DMT400096151 | Potato | cytosol | 25.94 | 25.88 |
| PGSC0003DMT400059327 | Potato | cytosol | 23.93 | 25.75 |
| Solyc10g075010.1.1 | Tomato | extracellular | 22.92 | 25.63 |
| Solyc05g007400.1.1 | Tomato | cytosol | 24.43 | 25.53 |
| Solyc10g068340.1.1 | Tomato | cytosol | 16.62 | 25.38 |
| Bra014991.1-P | Field mustard | cytosol | 23.17 | 24.86 |
| CDX77477 | Canola | cytosol | 23.17 | 24.86 |
| PGSC0003DMT400076274 | Potato | cytosol | 24.18 | 24.81 |
| PGSC0003DMT400076282 | Potato | nucleus | 9.82 | 24.68 |
| PGSC0003DMT400059330 | Potato | extracellular | 23.43 | 24.6 |
| PGSC0003DMT400025788 | Potato | cytosol | 24.18 | 24.49 |
| PGSC0003DMT400090382 | Potato | cytosol | 23.68 | 24.48 |
| PGSC0003DMT400067303 | Potato | extracellular | 22.42 | 24.32 |
| Solyc09g072910.1.1 | Tomato | plasma membrane | 26.7 | 24.26 |
| PGSC0003DMT400076284 | Potato | cytosol | 25.69 | 24.06 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 22.92 | 23.16 |
| PGSC0003DMT400045556 | Potato | cytosol | 26.7 | 22.94 |
| PGSC0003DMT400090333 | Potato | cytosol | 17.88 | 22.9 |
| KRH72048 | Soybean | cytosol | 20.15 | 22.66 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 10.08 | 22.22 |
| PGSC0003DMT400094202 | Potato | cytosol | 15.87 | 21.95 |
| PGSC0003DMT400059329 | Potato | vacuole | 22.17 | 21.95 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 26.95 | 21.75 |
| Solyc07g052580.1.1 | Tomato | cytosol, peroxisome, plastid | 23.68 | 21.71 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 22.67 | 21.53 |
| Solyc05g007360.1.1 | Tomato | extracellular | 21.66 | 21.45 |
| PGSC0003DMT400080292 | Potato | cytosol | 10.33 | 20.71 |
| Solyc05g007370.1.1 | Tomato | golgi, mitochondrion, plasma membrane | 20.15 | 20.57 |
| Solyc05g007380.1.1 | Tomato | endoplasmic reticulum, golgi | 20.65 | 20.3 |
| PGSC0003DMT400030295 | Potato | cytosol | 9.82 | 19.7 |
| PGSC0003DMT400097507 | Potato | cytosol | 11.59 | 19.33 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 13.35 | 19.2 |
| PGSC0003DMT400088797 | Potato | cytosol | 11.84 | 19.11 |
| PGSC0003DMT400093810 | Potato | plastid | 13.35 | 18.93 |
| PGSC0003DMT400059334 | Potato | plastid | 17.13 | 18.89 |
| PGSC0003DMT400053926 | Potato | cytosol | 12.34 | 18.63 |
| VIT_05s0124g00010.t01 | Wine grape | extracellular | 22.67 | 13.78 |
| PGSC0003DMT400080293 | Potato | nucleus | 8.06 | 12.6 |
| CDX85142 | Canola | cytosol | 23.68 | 11.45 |
| CDY27453 | Canola | cytosol, mitochondrion | 2.27 | 9.38 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:100267195 | wikigene:100267195 | MapMan:19.2.2.8.1.4.6 | EMBL:AM479979 | ProteinID:CAN75235 |
| ProteinID:CAN75235.1 | ProteinID:CCB61686 | ProteinID:CCB61686.1 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | UniProt:F6I3W3 | EMBL:FN596744 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | EntrezGene:LOC100267195 | wikigene:LOC100267195 | PFAM:PF00646 | PFAM:PF08268 |
| PFscan:PS50181 | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 | SMART:SM00256 | SUPFAM:SSF50965 | SUPFAM:SSF81383 |
| TIGRFAMs:TIGR01640 | UniParc:UPI0001985596 | ArrayExpress:VIT_18s0041g01090 | EnsemblPlantsGene:VIT_18s0041g01090 | EnsemblPlants:VIT_18s0041g01090.t01 | RefSeq:XP_002280424 |
| RefSeq:XP_002280424.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr18:-:25645181..25647652
Molecular Weight (calculated)
45456.6 Da
IEP (calculated)
6.241
GRAVY (calculated)
-0.166
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MESRDRPSSS RRPSKRVRIT ATLPHIPDEI ILEILCLLPV KSLMRFKCVS KSWREMISDP DFEKKQLAVA ARDSGEVYNS RLIMHYPSMK LKSCPLSCLF
101: YEPVGHSVNH EYPGSELGAM NEIIGSYNGL VCFCIRDTEN DIIFVWNPST REFRRLPPIS FMQCFHLVAY GFGYDSIADD YKVTRVGCYC IGRYYEYQVR
201: VFSLRGNVWR KIENFPCYLF TDEPGIHVNG SINFGGVGDS ENYYWSVVGL DLASESYRMV PLPDCADPNV KPMIMALGGR FCTIFDNDEA VDVWVMEQYG
301: VKKSWNKLVT VPYFPDPMTV DCTKPVFFLR DGAILMEFYG LLVLYNIDRD ESTIPTIYGT RHCHEVEVYL ETIVSPNAYY RLQAGHQNGG IGRQGIS
101: YEPVGHSVNH EYPGSELGAM NEIIGSYNGL VCFCIRDTEN DIIFVWNPST REFRRLPPIS FMQCFHLVAY GFGYDSIADD YKVTRVGCYC IGRYYEYQVR
201: VFSLRGNVWR KIENFPCYLF TDEPGIHVNG SINFGGVGDS ENYYWSVVGL DLASESYRMV PLPDCADPNV KPMIMALGGR FCTIFDNDEA VDVWVMEQYG
301: VKKSWNKLVT VPYFPDPMTV DCTKPVFFLR DGAILMEFYG LLVLYNIDRD ESTIPTIYGT RHCHEVEVYL ETIVSPNAYY RLQAGHQNGG IGRQGIS
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.