CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20939	Soybean	cytosol, mitochondrion	96.08	90.64
KRH11341	Soybean	cytosol, plastid	41.78	40.71
KRH35044	Soybean	cytosol, extracellular, golgi	35.77	38.16
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	36.03	37.3
Solyc09g091710.1.1	Tomato	nucleus	38.64	36.82
Solyc01g067030.2.1	Tomato	extracellular	34.99	36.31
PGSC0003DMT400076275	Potato	nucleus	37.86	36.07
KRH35047	Soybean	cytosol, peroxisome, plastid	36.55	35.62
PGSC0003DMT400080382	Potato	golgi	34.73	35.37
Solyc10g052710.1.1	Tomato	cytosol	34.73	34.82
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	29.77	34.76
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	30.29	34.63
VIT_18s0041g01100.t01	Wine grape	cytosol	21.93	34.57
PGSC0003DMT400055337	Potato	plastid	36.29	34.24
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	33.68	34.13
Solyc10g008450.1.1	Tomato	extracellular, vacuole	31.07	34.1
Solyc02g033040.2.1	Tomato	nucleus	30.03	33.82
PGSC0003DMT400016504	Potato	cytosol	33.94	33.68
PGSC0003DMT400076216	Potato	cytosol	33.94	33.42
Solyc09g083230.1.1	Tomato	cytosol, peroxisome, plastid	33.16	33.33
PGSC0003DMT400096925	Potato	cytosol	21.93	33.33
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	34.73	33.25
Solyc09g091690.1.1	Tomato	cytosol	33.68	33.25
PGSC0003DMT400092235	Potato	cytosol	28.72	33.23
PGSC0003DMT400006240	Potato	mitochondrion	28.46	33.23
PGSC0003DMT400035091	Potato	mitochondrion	33.94	33.16
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	30.29	32.86
KRH72048	Soybean	cytosol	30.29	32.86
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	31.59	32.7
PGSC0003DMT400034123	Potato	golgi	31.33	32.7
VIT_18s0041g01090.t01	Wine grape	cytosol	33.68	32.49
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	31.33	32.43
PGSC0003DMT400096151	Potato	cytosol	33.68	32.41
Solyc09g091220.1.1	Tomato	cytosol	33.68	32.41
PGSC0003DMT400095263	Potato	cytosol	22.98	32.35
PGSC0003DMT400080239	Potato	cytosol, plastid	26.89	32.29
PGSC0003DMT400090333	Potato	cytosol	26.11	32.26
PGSC0003DMT400009785	Potato	cytosol	31.85	32.19
PGSC0003DMT400080369	Potato	nucleus	33.42	32.08
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	31.07	31.99
Solyc05g007530.1.1	Tomato	cytosol	31.07	31.99
Solyc10g068340.1.1	Tomato	cytosol	21.67	31.92
PGSC0003DMT400085500	Potato	cytosol	31.85	31.85
PGSC0003DMT400076282	Potato	nucleus	13.05	31.65
PGSC0003DMT400009709	Potato	cytosol	31.07	31.48
PGSC0003DMT400059327	Potato	cytosol	30.29	31.44
PGSC0003DMT400094202	Potato	cytosol	23.24	31.01
Solyc01g067010.2.1	Tomato	cytosol, extracellular, plasma membrane	30.03	31.0
Solyc10g075010.1.1	Tomato	extracellular	28.72	30.99
PGSC0003DMT400031977	Potato	cytosol	32.11	30.98
PGSC0003DMT400076284	Potato	cytosol	34.2	30.9
PGSC0003DMT400067303	Potato	extracellular	28.98	30.33
CDX77477	Canola	cytosol	29.24	30.27
PGSC0003DMT400076274	Potato	cytosol	30.55	30.23
PGSC0003DMT400090382	Potato	cytosol	30.03	29.95
AT3G23880.1	Thale cress	cytosol	28.46	29.95
Solyc09g072930.1.1	Tomato	cytosol, plasma membrane	29.77	29.53
Bra014991.1-P	Field mustard	cytosol	28.46	29.46
PGSC0003DMT400025788	Potato	cytosol	30.03	29.34
Solyc05g007400.1.1	Tomato	cytosol	28.98	29.21
Solyc05g005110.1.1	Tomato	mitochondrion, plastid	30.55	28.89
PGSC0003DMT400030295	Potato	cytosol	14.88	28.79
PGSC0003DMT400059330	Potato	extracellular	28.2	28.57
Solyc09g072910.1.1	Tomato	plasma membrane	31.85	27.92
PGSC0003DMT400045556	Potato	cytosol	32.9	27.27
PGSC0003DMT400093810	Potato	plastid	19.84	27.14
KRH51164	Soybean	cytosol	27.15	27.01
Solyc07g052580.1.1	Tomato	cytosol, peroxisome, plastid	30.29	26.79
PGSC0003DMT400015653	Potato	cytosol, plastid	33.94	26.42
KRH01989	Soybean	cytosol	26.63	26.02
Solyc05g007370.1.1	Tomato	golgi, mitochondrion, plasma membrane	26.11	25.71
PGSC0003DMT400059329	Potato	vacuole	26.89	25.69
KRH11533	Soybean	cytosol	26.37	25.63
PGSC0003DMT400097507	Potato	cytosol	15.93	25.63
KRH36548	Soybean	cytosol, plastid	26.11	25.51
Solyc05g007360.1.1	Tomato	extracellular	26.37	25.19
Solyc05g007380.1.1	Tomato	endoplasmic reticulum, golgi	26.11	24.75
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	17.75	24.64
PGSC0003DMT400080292	Potato	cytosol	12.53	24.24
PGSC0003DMT400053922	Potato	extracellular, golgi	25.85	23.68
PGSC0003DMT400088797	Potato	cytosol	14.88	23.17
PGSC0003DMT400053926	Potato	cytosol	15.67	22.81
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	10.44	22.22
PGSC0003DMT400059334	Potato	plastid	19.84	21.11
PGSC0003DMT400080293	Potato	nucleus	10.97	16.54
CDX85142	Canola	cytosol	28.98	13.52

Protein Annotations

EntrezGene:100779800	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EMBL:ACUP02009202	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_15G101600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146	UniProt:I1MFB7	InterPro:IPR001810
InterPro:IPR032675	EnsemblPlants:KRH11340	ProteinID:KRH11340	ProteinID:KRH11340.1	InterPro:LRR_dom_sf	PFAM:PF00646
PFscan:PS50181	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI000294FC1B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:7914179..7916576

Molecular Weight (calculated)

43772.5 Da

IEP (calculated)

7.477

GRAVY (calculated)

-0.202

Length

383 amino acids

Sequence
(BLAST)

001: MDRTSPLPPS SVQKQQGMSE SLPLPFLPDE LVVEILSRLP VKSLLQFRCV CKSWMSLIYD PYFMKKHLHL SSRSTHFTHH RIILSATTAE FHLKSCSLSS
101: LFNNLSTVCD ELNYPVKNKF RHDGIVGSCN GLLCFAIKGD CVLLWNPSIR VSKKSPPLGN NWRPGCFTAF GLGYDHVNED YKVVAVFCDP SEYFIECKVK
201: VYSMATNSWR KIQDFPHGFS PFQNSGKFVS GTLNWAANHS IGSSSLWVIV SLDLHKETYR EVLPPDYEKE DCSTPGLGVL QGCLCMNYDY KKTHFVVWMM
301: KDYGARESWV KLVSIPYVPN PENFSYSGPY YISENGEVLL MFEFDLILYN PRDNSFKYPK IESGKGWFDA EVYVETLVSP MKH

Best Arabidopsis Sequence Match ( AT3G23880.1 )
(BLAST)

001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL

Arabidopsis Description

F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.