Factsheet for PGSC0003DMT400055337

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g033040.2.1	Tomato	nucleus	71.92	85.88
PGSC0003DMT400080369	Potato	nucleus	58.37	59.4
PGSC0003DMT400076275	Potato	nucleus	55.17	55.72
PGSC0003DMT400085500	Potato	cytosol	47.04	49.87
PGSC0003DMT400096151	Potato	cytosol	48.28	49.25
PGSC0003DMT400080382	Potato	golgi	44.58	48.14
PGSC0003DMT400090333	Potato	cytosol	36.21	47.42
PGSC0003DMT400009709	Potato	cytosol	43.84	47.09
PGSC0003DMT400094202	Potato	cytosol	33.25	47.04
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	46.06	46.75
PGSC0003DMT400009785	Potato	cytosol	43.35	46.44
PGSC0003DMT400006240	Potato	mitochondrion	37.19	46.04
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	36.95	45.73
PGSC0003DMT400016504	Potato	cytosol	43.35	45.6
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	42.36	45.5
PGSC0003DMT400076282	Potato	nucleus	17.24	44.3
PGSC0003DMT400035091	Potato	mitochondrion	42.36	43.88
PGSC0003DMT400095263	Potato	cytosol	29.31	43.75
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	37.93	43.63
PGSC0003DMT400092235	Potato	cytosol	34.98	42.9
PGSC0003DMT400097507	Potato	cytosol	24.88	42.44
PGSC0003DMT400031977	Potato	cytosol	41.38	42.32
PGSC0003DMT400080239	Potato	cytosol, plastid	32.51	41.38
PGSC0003DMT400076284	Potato	cytosol	42.12	40.33
PGSC0003DMT400045556	Potato	cytosol	44.09	38.74
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	35.22	38.44
PGSC0003DMT400096925	Potato	cytosol	23.65	38.1
PGSC0003DMT400067303	Potato	extracellular	34.24	37.98
PGSC0003DMT400059327	Potato	cytosol	34.48	37.94
PGSC0003DMT400015653	Potato	cytosol, plastid	44.34	36.59
KRH11340	Soybean	cytosol, peroxisome, plastid	34.24	36.29
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	33.0	36.22
PGSC0003DMT400090382	Potato	cytosol	33.74	35.68
PGSC0003DMT400059330	Potato	extracellular	33.0	35.45
PGSC0003DMT400093810	Potato	plastid	24.14	35.0
KRH20939	Soybean	cytosol, mitochondrion	34.48	34.48
PGSC0003DMT400076216	Potato	cytosol	33.0	34.45
KRH11341	Soybean	cytosol, plastid	32.76	33.84
PGSC0003DMT400076274	Potato	cytosol	31.77	33.33
PGSC0003DMT400080292	Potato	cytosol	16.26	33.33
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	27.34	33.13
PGSC0003DMT400059329	Potato	vacuole	32.51	32.92
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	29.8	32.7
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	29.8	32.7
PGSC0003DMT400034123	Potato	golgi	29.56	32.7
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	21.67	31.88
PGSC0003DMT400053926	Potato	cytosol	20.44	31.56
PGSC0003DMT400088797	Potato	cytosol	18.97	31.3
PGSC0003DMT400025788	Potato	cytosol	29.8	30.87
KRH35044	Soybean	cytosol, extracellular, golgi	26.85	30.36
VIT_18s0041g01100.t01	Wine grape	cytosol	17.49	29.22
PGSC0003DMT400053922	Potato	extracellular, golgi	30.05	29.19
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	12.56	28.33
AT3G23880.1	Thale cress	cytosol	25.37	28.3
PGSC0003DMT400059334	Potato	plastid	24.88	28.06
KRH35047	Soybean	cytosol, peroxisome, plastid	27.09	27.99
PGSC0003DMT400012000	Potato	plastid	25.12	27.57
Bra014991.1-P	Field mustard	cytosol	25.12	27.57
KRH72048	Soybean	cytosol	23.4	26.91
PGSC0003DMT400030295	Potato	cytosol	13.05	26.77
VIT_18s0041g01090.t01	Wine grape	cytosol	26.11	26.7
PGSC0003DMT400016096	Potato	cytosol	13.55	26.57
PGSC0003DMT400058829	Potato	cytosol	23.65	26.37
PGSC0003DMT400046369	Potato	cytosol	25.62	25.74
PGSC0003DMT400016099	Potato	cytosol	22.66	25.0
PGSC0003DMT400080293	Potato	nucleus	15.02	24.02
PGSC0003DMT400016057	Potato	cytosol	21.67	23.59
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	10.84	23.28

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102605089	MapMan:19.2.2.8.1.4.6	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810
UniProt:M1BXR6	PFAM:PF00646	PFAM:PF07734	EnsemblPlantsGene:PGSC0003DMG400021478	PGSC:PGSC0003DMG400021478	EnsemblPlants:PGSC0003DMT400055337
PFscan:PS50181	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI000296E3EB	RefSeq:XP_006350471.1	:	:	:

Description

F-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021478]

Coordinates

chr2:+:17440094..17444430

Molecular Weight (calculated)

46891.2 Da

IEP (calculated)

9.034

GRAVY (calculated)

-0.321

Length

406 amino acids

Sequence
(BLAST)

001: MESKRNGASN LPPKRKNTHK SAQLPSTSVK DSRIPVLPEE LVTQILLRLP VKSLLKFRSV SKSWLGLISN PEFINTHLSK SANNKDFTHH RFMLSFCLPK
101: YNLKDCSASS LLYDSVAEAL DLEYPTKEIR RSVEIVGSVN GLICLVIAKK YFLIWNPSIR KFKKLPECRD ELCFGHHSMY GFVYDEVHGD YKVVAGFNNE
201: GYGYSFLVKV KMYSLNSDSW TSLEDFESGV LGTKSGVFVN GKLHWANSVY RRSGWDIISV DLADRTWGEV EQPYYGEGDF GWTLGVLGTD LSVFSNYRRI
301: QADVWVLKEY GVKESWIKMF TIDIPCDPRM GYKFCQFFCM SNKGEVLFHF GSTFMIYNAK DHSITHRSPH LEVTGYDYEA SIYIESLVWP FFQRKESRMQ
401: QRRRLK

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.