Factsheet for VIT_18s0041g01100.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0041g01090.t01	Wine grape	cytosol	60.08	36.78
PGSC0003DMT400076282	Potato	nucleus	18.11	27.85
PGSC0003DMT400097507	Potato	cytosol	23.05	23.53
PGSC0003DMT400088797	Potato	cytosol	22.22	21.95
KRH11340	Soybean	cytosol, peroxisome, plastid	34.57	21.93
PGSC0003DMT400030295	Potato	cytosol	17.7	21.72
PGSC0003DMT400094202	Potato	cytosol	25.1	21.25
PGSC0003DMT400080292	Potato	cytosol	17.28	21.21
KRH11341	Soybean	cytosol, plastid	34.16	21.12
KRH20939	Soybean	cytosol, mitochondrion	34.98	20.94
PGSC0003DMT400090333	Potato	cytosol	26.34	20.65
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	31.28	20.54
Solyc01g067030.2.1	Tomato	extracellular	30.86	20.33
PGSC0003DMT400092235	Potato	cytosol	27.57	20.24
PGSC0003DMT400080382	Potato	golgi	30.86	19.95
Solyc09g091710.1.1	Tomato	nucleus	32.51	19.65
PGSC0003DMT400093810	Potato	plastid	22.63	19.64
KRH35044	Soybean	cytosol, extracellular, golgi	28.81	19.5
Solyc10g008450.1.1	Tomato	extracellular, vacuole	27.98	19.48
Solyc09g072930.1.1	Tomato	cytosol, plasma membrane	30.45	19.17
PGSC0003DMT400076275	Potato	nucleus	31.69	19.15
PGSC0003DMT400080239	Potato	cytosol, plastid	25.1	19.12
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	27.57	18.98
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	13.99	18.89
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	25.93	18.81
PGSC0003DMT400076216	Potato	cytosol	30.04	18.77
PGSC0003DMT400053926	Potato	cytosol	20.16	18.63
PGSC0003DMT400076274	Potato	cytosol	29.63	18.6
AT3G23880.1	Thale cress	cytosol	27.57	18.41
Solyc09g083230.1.1	Tomato	cytosol, peroxisome, plastid	28.81	18.37
VIT_05s0124g00230.t01	Wine grape	cytosol	27.16	18.33
PGSC0003DMT400080369	Potato	nucleus	30.04	18.3
PGSC0003DMT400009709	Potato	cytosol	28.4	18.25
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	30.04	18.25
PGSC0003DMT400009785	Potato	cytosol	28.4	18.21
Solyc09g091690.1.1	Tomato	cytosol	28.81	18.04
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	27.57	18.01
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	27.16	17.84
Solyc10g075010.1.1	Tomato	extracellular	25.93	17.75
Solyc05g007530.1.1	Tomato	cytosol	27.16	17.74
PGSC0003DMT400016504	Potato	cytosol	27.98	17.62
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	26.75	17.57
Solyc10g052710.1.1	Tomato	cytosol	27.57	17.54
PGSC0003DMT400085500	Potato	cytosol	27.57	17.49
PGSC0003DMT400055337	Potato	plastid	29.22	17.49
PGSC0003DMT400067303	Potato	extracellular	26.34	17.49
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	27.16	17.46
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	19.75	17.39
PGSC0003DMT400031977	Potato	cytosol	28.4	17.38
Solyc01g067010.2.1	Tomato	cytosol, extracellular, plasma membrane	26.34	17.25
Solyc09g072910.1.1	Tomato	plasma membrane	30.86	17.16
PGSC0003DMT400035091	Potato	mitochondrion	27.57	17.09
PGSC0003DMT400096151	Potato	cytosol	27.98	17.09
PGSC0003DMT400006240	Potato	mitochondrion	23.05	17.07
PGSC0003DMT400076284	Potato	cytosol	29.63	16.98
PGSC0003DMT400025788	Potato	cytosol	27.16	16.84
Solyc02g033040.2.1	Tomato	nucleus	23.46	16.76
PGSC0003DMT400059327	Potato	cytosol	25.1	16.53
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	22.22	16.46
PGSC0003DMT400059330	Potato	extracellular	25.51	16.4
Solyc09g091220.1.1	Tomato	cytosol	26.75	16.33
KRH35047	Soybean	cytosol, peroxisome, plastid	26.34	16.29
PGSC0003DMT400034123	Potato	golgi	24.28	16.08
Bra014991.1-P	Field mustard	cytosol	24.28	15.95
CDX77477	Canola	cytosol	24.28	15.95
Solyc05g007400.1.1	Tomato	cytosol	24.69	15.79
Solyc05g005110.1.1	Tomato	mitochondrion, plastid	25.93	15.56
PGSC0003DMT400096925	Potato	cytosol	15.64	15.08
Solyc05g007360.1.1	Tomato	extracellular	24.69	14.96
PGSC0003DMT400090382	Potato	cytosol	23.46	14.84
Solyc07g052580.1.1	Tomato	cytosol, peroxisome, plastid	26.34	14.78
KRH72048	Soybean	cytosol	21.4	14.73
PGSC0003DMT400095263	Potato	cytosol	16.46	14.71
PGSC0003DMT400059329	Potato	vacuole	23.87	14.46
PGSC0003DMT400015653	Potato	cytosol, plastid	28.4	14.02
PGSC0003DMT400045556	Potato	cytosol	26.34	13.85
Solyc05g007370.1.1	Tomato	golgi, mitochondrion, plasma membrane	21.4	13.37
Solyc05g007380.1.1	Tomato	endoplasmic reticulum, golgi	22.22	13.37
Solyc10g068340.1.1	Tomato	cytosol	13.99	13.08
PGSC0003DMT400053922	Potato	extracellular, golgi	21.81	12.68
PGSC0003DMT400059334	Potato	plastid	18.11	12.22
PGSC0003DMT400080293	Potato	nucleus	12.76	12.2
CDY27453	Canola	cytosol, mitochondrion	4.53	11.46
VIT_05s0124g00010.t01	Wine grape	extracellular	23.05	8.58
CDX85142	Canola	cytosol	25.51	7.55

Protein Annotations

ArrayExpress:VIT_18s0041g01100	EMBL:FN596744	EnsemblPlants:VIT_18s0041g01100.t01	EnsemblPlantsGene:VIT_18s0041g01100	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom
PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	PFAM:PF07734	ProteinID:CBI39304	ProteinID:CBI39304.3	TIGRFAMs:TIGR01640
UniParc:UPI0001BE4F6D	UniProt:D7U990	MapMan:19.2.2.8.1.4.6	:	:	:

Description

No Description!

Coordinates

chr18:-:25655818..25656549

Molecular Weight (calculated)

28437.6 Da

IEP (calculated)

4.663

GRAVY (calculated)

-0.177

Length

243 amino acids

Sequence
(BLAST)

001: MEKDTIFVWN PSIKESKRLP SKPFEQLFYL VSYAFGYDSI TDDYKVVRLV CCSINDSYEY HVEVFSLRSN AWRKIRSFPY FLFTDEAGKH VNGSINWAVS
101: RDKNNDHWFI ASLDLATESY EVVPQPDCAN ETLKPIIRVL GGQFCIIFEY DDIIDVWVMQ EYGVKESWSK LVTVPFFSDP LDANYAKPLF YLKEGAILID
201: FYGMLILYNF NRNESTSPMI YGVHHYHEVE VYLESMVSPN SYN

Best Arabidopsis Sequence Match ( AT3G06240.1 )
(BLAST)

001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES

Arabidopsis Description

F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.