Factsheet for Solyc09g072910.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g091710.1.1	Tomato	nucleus	37.99	41.29
Solyc10g052710.1.1	Tomato	cytosol	35.01	40.05
Solyc02g033040.2.1	Tomato	nucleus	30.89	39.71
Solyc09g083230.1.1	Tomato	cytosol, peroxisome, plastid	34.32	39.37
PGSC0003DMT400095263	Potato	cytosol	24.49	39.34
Solyc10g068340.1.1	Tomato	cytosol	22.65	38.08
Solyc09g072930.1.1	Tomato	cytosol, plasma membrane	31.35	35.49
Solyc05g007530.1.1	Tomato	cytosol	29.98	35.22
Solyc10g075010.1.1	Tomato	extracellular	28.38	34.93
Solyc05g005110.1.1	Tomato	mitochondrion, plastid	31.81	34.32
Solyc01g067030.2.1	Tomato	extracellular	27.92	33.06
KRH11340	Soybean	cytosol, peroxisome, plastid	27.92	31.85
Solyc05g007400.1.1	Tomato	cytosol	27.46	31.58
Solyc09g091690.1.1	Tomato	cytosol	27.46	30.93
VIT_18s0041g01100.t01	Wine grape	cytosol	17.16	30.86
KRH20939	Soybean	cytosol, mitochondrion	28.6	30.79
Solyc01g067010.2.1	Tomato	cytosol, extracellular, plasma membrane	25.86	30.46
Solyc07g052580.1.1	Tomato	cytosol, peroxisome, plastid	29.98	30.25
Solyc10g008450.1.1	Tomato	extracellular, vacuole	24.03	30.09
Solyc05g007370.1.1	Tomato	golgi, mitochondrion, plasma membrane	26.54	29.82
Solyc05g007360.1.1	Tomato	extracellular	27.0	29.43
KRH35044	Soybean	cytosol, extracellular, golgi	23.57	28.69
KRH11341	Soybean	cytosol, plastid	25.63	28.5
Solyc09g091220.1.1	Tomato	cytosol	25.86	28.39
Solyc05g007380.1.1	Tomato	endoplasmic reticulum, golgi	26.09	28.22
Solyc12g099550.1.1	Tomato	cytosol	21.05	27.3
KRH35047	Soybean	cytosol, peroxisome, plastid	24.03	26.72
VIT_18s0041g01090.t01	Wine grape	cytosol	24.26	26.7
Solyc01g008660.2.1	Tomato	cytosol	20.59	26.16
AT3G23880.1	Thale cress	cytosol	21.51	25.82
Bra014991.1-P	Field mustard	cytosol	21.05	24.86
KRH72048	Soybean	cytosol	19.45	24.08

Protein Annotations

EnsemblPlants:Solyc09g072910.1.1	EnsemblPlantsGene:Solyc09g072910.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR44355
PANTHER:PTHR44355:SF1	PFAM:PF00646	PFAM:PF07734	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI000276B17F	UniProt:K4CUW7	MapMan:19.2.2.8.1.4.6	:	:	:

Description

No Description!

Coordinates

chr9:-:65599205..65600644

Molecular Weight (calculated)

49712.6 Da

IEP (calculated)

6.581

GRAVY (calculated)

-0.105

Length

437 amino acids

Sequence
(BLAST)

001: MESEAGYQQS KPPKSMLPFS ILPPELNTDI LLRLPVSSVL IIRSVSKSCL AFTSTPEFIK AHLNVSANHK ILLSCSQPNF NLKECSFTSL LNSFVLDTSD
101: LDCSMTSYVW FVVGSVNGLI CLSNTENELF LWNPSTRKHK QLPDFTFKFK NAERFIYGFG YDECHDDYKV VACIYPPGFL PLFGDYVKIY SLKDDSWRSI
201: SIPQDWVKSF NCGKFVNGKL NWAYNSNCTG PFWRKGRNII SLDLADDKWE KVEAPCYSEE DGIFVLGVLE NNLSVICNGN YEGTDLDLWV RKEYGVKESW
301: TKMFTFKYPH PYPSLMFLFY PPHLASNKGK VLLMCGKTFV LYNLKGESIT HPEFTTFRSD LVSVESTYLE SLVSPILQND QGHNKMKGAE AHMDAIDLVV
401: KWSLSFALTK KRVSNQSYLC CMLNVDCAWD SLACAVF

Best Arabidopsis Sequence Match ( AT3G06240.1 )
(BLAST)

001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES

Arabidopsis Description

F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.