Factsheet for Solyc12g099550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012000	Potato	plastid	90.21	82.16
Solyc01g008660.2.1	Tomato	cytosol	28.19	27.62
Bra001187.1-P	Field mustard	cytosol	21.07	26.79
Solyc10g068340.1.1	Tomato	cytosol	19.58	25.38
Solyc10g008450.1.1	Tomato	extracellular, vacuole	26.11	25.21
Solyc09g091690.1.1	Tomato	cytosol	28.19	24.48
Solyc09g083230.1.1	Tomato	cytosol, peroxisome, plastid	27.6	24.41
Solyc09g091710.1.1	Tomato	nucleus	28.78	24.13
AT3G06240.1	Thale cress	cytosol	30.27	23.89
Solyc01g067030.2.1	Tomato	extracellular	26.11	23.85
CDY58343	Canola	cytosol	28.49	23.76
CDY08063	Canola	cytosol	28.19	23.63
Solyc02g033040.2.1	Tomato	nucleus	23.74	23.53
Solyc01g067010.2.1	Tomato	cytosol, extracellular, plasma membrane	25.82	23.45
Solyc10g052710.1.1	Tomato	cytosol	26.41	23.3
Solyc10g075010.1.1	Tomato	extracellular	23.74	22.54
Solyc05g005110.1.1	Tomato	mitochondrion, plastid	27.0	22.47
Solyc09g072930.1.1	Tomato	cytosol, plasma membrane	24.93	21.76
Solyc09g091220.1.1	Tomato	cytosol	25.22	21.36
Solyc05g007530.1.1	Tomato	cytosol	23.44	21.24
Solyc09g072910.1.1	Tomato	plasma membrane	27.3	21.05
Solyc05g007400.1.1	Tomato	cytosol	23.74	21.05
Solyc05g007360.1.1	Tomato	extracellular	23.44	19.7
Solyc07g052580.1.1	Tomato	cytosol, peroxisome, plastid	24.93	19.4
Solyc05g007380.1.1	Tomato	endoplasmic reticulum, golgi	22.26	18.56
Solyc05g007370.1.1	Tomato	golgi, mitochondrion, plasma membrane	21.36	18.51

Protein Annotations

EnsemblPlants:Solyc12g099550.1.1	EnsemblPlantsGene:Solyc12g099550.1	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PANTHER:PTHR31790:SF34	PFAM:PF00646	PFAM:PF07734	PFscan:PS50181	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI000276A84F	UniProt:K4DHX6	MapMan:19.2.2.8.1.4.6	:	:

Description

No Description!

Coordinates

chr12:-:66661677..66663236

Molecular Weight (calculated)

37982.7 Da

IEP (calculated)

4.828

GRAVY (calculated)

0.080

Length

337 amino acids

Sequence
(BLAST)

001: MILVVKMSIF NGGHLPQELL INIFCRLPAK SIGQLRCVSN PLNSFLSNKQ FLKAHFTSII HFQEPQKHIL LSHSGSFQTI TFKNNGVFSN SININPTPSD
101: QFVDICGSCN GLVLILNKDD SKVVINPTTL DFKKIPNSPF ALDPIGSFSM YGFGYDYVND DYKIVVISRY DHDNEYEPDV LDMFMDIYSL KVGSWKRIKS
201: SPYDHAVPEL ASGVFVNGAL HWLASKKPDY VSVIGAFVLS DEEFVEVVAP SSLDEGKFVF NKLVVLKGCL CMAVDYLEGN GNRIDVWMMK EYGVEESWTK
301: FCVDGIDFYD FLKPLCFIRD DEVVSLVSPI DPNLFEI

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.