Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400090382 | Potato | cytosol | 82.89 | 82.03 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 49.21 | 67.75 |
| Solyc05g007530.1.1 | Tomato | cytosol | 48.42 | 49.46 |
| Solyc05g007360.1.1 | Tomato | extracellular | 50.53 | 47.88 |
| Solyc05g007370.1.1 | Tomato | golgi, mitochondrion, plasma membrane | 48.95 | 47.81 |
| Solyc05g007380.1.1 | Tomato | endoplasmic reticulum, golgi | 48.95 | 46.04 |
| Solyc07g052580.1.1 | Tomato | cytosol, peroxisome, plastid | 49.74 | 43.65 |
| Solyc09g091710.1.1 | Tomato | nucleus | 38.68 | 36.57 |
| Solyc02g033040.2.1 | Tomato | nucleus | 32.11 | 35.88 |
| Solyc09g072930.1.1 | Tomato | cytosol, plasma membrane | 36.05 | 35.49 |
| Solyc09g083230.1.1 | Tomato | cytosol, peroxisome, plastid | 35.53 | 35.43 |
| Solyc10g068340.1.1 | Tomato | cytosol | 24.21 | 35.38 |
| Solyc10g052710.1.1 | Tomato | cytosol | 33.68 | 33.51 |
| Solyc10g075010.1.1 | Tomato | extracellular | 30.53 | 32.68 |
| Solyc05g005110.1.1 | Tomato | mitochondrion, plastid | 34.74 | 32.59 |
| Solyc01g067030.2.1 | Tomato | extracellular | 31.32 | 32.25 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 29.21 | 28.98 |
| Solyc10g008450.1.1 | Tomato | extracellular, vacuole | 26.32 | 28.65 |
| Solyc09g091690.1.1 | Tomato | cytosol | 28.95 | 28.35 |
| KRH20939 | Soybean | cytosol, mitochondrion | 29.74 | 27.83 |
| KRH11341 | Soybean | cytosol, plastid | 28.42 | 27.48 |
| Solyc09g072910.1.1 | Tomato | plasma membrane | 31.58 | 27.46 |
| Bra014991.1-P | Field mustard | cytosol | 25.53 | 26.22 |
| Solyc09g091220.1.1 | Tomato | cytosol | 27.37 | 26.13 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 24.47 | 25.91 |
| Solyc01g067010.2.1 | Tomato | cytosol, extracellular, plasma membrane | 25.0 | 25.61 |
| AT3G23880.1 | Thale cress | cytosol | 23.95 | 25.0 |
| Solyc01g008660.2.1 | Tomato | cytosol | 22.37 | 24.71 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 15.79 | 24.69 |
| KRH72048 | Soybean | cytosol | 22.89 | 24.65 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 25.53 | 24.43 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 25.0 | 24.17 |
| Solyc12g099550.1.1 | Tomato | cytosol | 21.05 | 23.74 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0031146 | InterPro:IPR001810 | UniProt:K4BWR5 | PFAM:PF00646 | PFAM:PF07734 |
| PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 | SMART:SM00256 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc05g007400.1 | EnsemblPlants:Solyc05g007400.1.1 |
| TIGRFAMs:TIGR01640 | UniParc:UPI0002765C9F | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:1992647..1993789
Molecular Weight (calculated)
43625.4 Da
IEP (calculated)
8.704
GRAVY (calculated)
-0.192
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MATDSVLSLL LHDELITEIL LKLPVKSLSK FMCVSKSWLQ LISSPDFVKN HIKLTANDKR YIHHRLIFRK TNDDFKFCPL LPLFTKQQLI EELFHIKRSS
101: LSTHIVGSVN GLICVVHGKK EAYIWNPTIT KSKELPKFTC NLCSGYIRYG FGYDESRDDY KVVFINYPYN HSSSSDMTTV VNICSLRTNS WTTLHDQLQG
201: IFLLNQYGRF VNGKLYWTSS TRNNHYKVCN ITSFDLADGT WGSLELPSCG KDDFDINLGV VGSDLSLLYT CRRGAATSDV WIMKHSRVNV SWTKLFTIKY
301: HQNIKTHRCF APVFTFSIHF RHGEILLLLH SAIIIYDGST RQLKHTSDVT QCEEIYVESL VNPLTISDQG RRNQESPQSS
101: LSTHIVGSVN GLICVVHGKK EAYIWNPTIT KSKELPKFTC NLCSGYIRYG FGYDESRDDY KVVFINYPYN HSSSSDMTTV VNICSLRTNS WTTLHDQLQG
201: IFLLNQYGRF VNGKLYWTSS TRNNHYKVCN ITSFDLADGT WGSLELPSCG KDDFDINLGV VGSDLSLLYT CRRGAATSDV WIMKHSRVNV SWTKLFTIKY
301: HQNIKTHRCF APVFTFSIHF RHGEILLLLH SAIIIYDGST RQLKHTSDVT QCEEIYVESL VNPLTISDQG RRNQESPQSS
001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
Arabidopsis Description
CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.