Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400055337 | Potato | plastid | 85.88 | 71.92 |
| Solyc09g091710.1.1 | Tomato | nucleus | 52.35 | 44.28 |
| Solyc09g083230.1.1 | Tomato | cytosol, peroxisome, plastid | 45.29 | 40.42 |
| Solyc09g072930.1.1 | Tomato | cytosol, plasma membrane | 43.24 | 38.08 |
| Solyc10g052710.1.1 | Tomato | cytosol | 42.06 | 37.43 |
| Solyc10g068340.1.1 | Tomato | cytosol | 27.94 | 36.54 |
| Solyc05g007530.1.1 | Tomato | cytosol | 36.18 | 33.06 |
| Solyc10g075010.1.1 | Tomato | extracellular | 34.12 | 32.68 |
| Solyc05g005110.1.1 | Tomato | mitochondrion, plastid | 38.53 | 32.35 |
| Solyc05g007400.1.1 | Tomato | cytosol | 35.88 | 32.11 |
| Solyc09g072910.1.1 | Tomato | plasma membrane | 39.71 | 30.89 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 33.82 | 30.03 |
| KRH20939 | Soybean | cytosol, mitochondrion | 35.0 | 29.31 |
| Solyc01g067030.2.1 | Tomato | extracellular | 31.18 | 28.73 |
| Solyc01g067010.2.1 | Tomato | cytosol, extracellular, plasma membrane | 31.18 | 28.57 |
| Solyc05g007360.1.1 | Tomato | extracellular | 33.53 | 28.43 |
| Solyc09g091690.1.1 | Tomato | cytosol | 32.35 | 28.35 |
| Solyc05g007370.1.1 | Tomato | golgi, mitochondrion, plasma membrane | 32.35 | 28.28 |
| Solyc07g052580.1.1 | Tomato | cytosol, peroxisome, plastid | 35.88 | 28.18 |
| KRH11341 | Soybean | cytosol, plastid | 32.35 | 27.99 |
| Solyc10g008450.1.1 | Tomato | extracellular, vacuole | 27.65 | 26.93 |
| Solyc05g007380.1.1 | Tomato | endoplasmic reticulum, golgi | 31.76 | 26.73 |
| Solyc01g008660.2.1 | Tomato | cytosol | 26.47 | 26.16 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 27.35 | 25.91 |
| KRH72048 | Soybean | cytosol | 26.47 | 25.5 |
| AT3G23880.1 | Thale cress | cytosol | 27.06 | 25.27 |
| Bra014991.1-P | Field mustard | cytosol | 27.06 | 24.86 |
| Solyc09g091220.1.1 | Tomato | cytosol | 28.82 | 24.62 |
| Solyc12g099550.1.1 | Tomato | cytosol | 23.53 | 23.74 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 16.76 | 23.46 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 27.06 | 23.17 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 26.76 | 23.16 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0031146 | InterPro:IPR001810 | UniProt:K4B5P7 | PFAM:PF00646 | PFAM:PF07734 |
| PFscan:PS50181 | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 | SMART:SM00256 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc02g033040.2 |
| EnsemblPlants:Solyc02g033040.2.1 | TIGRFAMs:TIGR01640 | UniParc:UPI000276757E | : | : | : |
Description
No Description!
Coordinates
chr2:+:29703075..29704514
Molecular Weight (calculated)
38860.6 Da
IEP (calculated)
8.598
GRAVY (calculated)
-0.201
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MESKRNEASN LHSKRKKTRN SAQLPSSSVK DSIFNRIPVL PEEVVTQILL RLPVKSLLKF RSVSKSWLGL ISNPEFINTH LSKSANNKDF THHRFMLTIS
101: LPKYNLKDCS ASSLLYDSAA EALDLEYPTK EIRRSVEVVG SVHGLICLVI AKKYFLIWNP SIRKFKKLPE CRDEFCFGHH FLYGFGYDEV HGDYKVKMYS
201: LNSDSWTSLE DFDSGVLGTE SGVFVNGKLH WANSAYRRSG WDIISVDLAD STRGEVEQPY YAEGDFGLTL GVLGSDLSVF CNYRRIQAEV WVLKECGVKE
301: SWIKMFTIDI PCDPRMSYKF FNSFACQIKV KFCFILAQLS
101: LPKYNLKDCS ASSLLYDSAA EALDLEYPTK EIRRSVEVVG SVHGLICLVI AKKYFLIWNP SIRKFKKLPE CRDEFCFGHH FLYGFGYDEV HGDYKVKMYS
201: LNSDSWTSLE DFDSGVLGTE SGVFVNGKLH WANSAYRRSG WDIISVDLAD STRGEVEQPY YAEGDFGLTL GVLGSDLSVF CNYRRIQAEV WVLKECGVKE
301: SWIKMFTIDI PCDPRMSYKF FNSFACQIKV KFCFILAQLS
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.