Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 73.46 | 54.11 |
| Solyc10g075010.1.1 | Tomato | extracellular | 40.38 | 29.58 |
| Solyc09g091710.1.1 | Tomato | nucleus | 43.46 | 28.11 |
| Solyc02g033040.2.1 | Tomato | nucleus | 36.54 | 27.94 |
| Solyc10g052710.1.1 | Tomato | cytosol | 40.77 | 27.75 |
| Solyc05g007530.1.1 | Tomato | cytosol | 37.31 | 26.08 |
| Solyc09g083230.1.1 | Tomato | cytosol, peroxisome, plastid | 36.92 | 25.2 |
| Solyc09g072930.1.1 | Tomato | cytosol, plasma membrane | 36.92 | 24.87 |
| Solyc05g007400.1.1 | Tomato | cytosol | 35.38 | 24.21 |
| Solyc05g005110.1.1 | Tomato | mitochondrion, plastid | 36.92 | 23.7 |
| Solyc09g072910.1.1 | Tomato | plasma membrane | 38.08 | 22.65 |
| Solyc01g067030.2.1 | Tomato | extracellular | 30.77 | 21.68 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 31.92 | 21.67 |
| KRH20939 | Soybean | cytosol, mitochondrion | 32.69 | 20.94 |
| Solyc07g052580.1.1 | Tomato | cytosol, peroxisome, plastid | 34.62 | 20.79 |
| Solyc05g007360.1.1 | Tomato | extracellular | 31.54 | 20.45 |
| Solyc09g091220.1.1 | Tomato | cytosol | 31.15 | 20.35 |
| Solyc01g008660.2.1 | Tomato | cytosol | 26.54 | 20.06 |
| KRH11341 | Soybean | cytosol, plastid | 30.0 | 19.85 |
| Solyc05g007370.1.1 | Tomato | golgi, mitochondrion, plasma membrane | 29.62 | 19.79 |
| Solyc09g091690.1.1 | Tomato | cytosol | 29.23 | 19.59 |
| Solyc12g099550.1.1 | Tomato | cytosol | 25.38 | 19.58 |
| Solyc05g007380.1.1 | Tomato | endoplasmic reticulum, golgi | 29.62 | 19.06 |
| Solyc01g067010.2.1 | Tomato | cytosol, extracellular, plasma membrane | 26.54 | 18.6 |
| KRH72048 | Soybean | cytosol | 25.0 | 18.41 |
| Solyc10g008450.1.1 | Tomato | extracellular, vacuole | 24.23 | 18.05 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 23.46 | 16.99 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 25.38 | 16.62 |
| Bra014991.1-P | Field mustard | cytosol | 23.08 | 16.22 |
| AT3G23880.1 | Thale cress | cytosol | 22.69 | 16.21 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 23.85 | 15.78 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 13.08 | 13.99 |
Protein Annotations
| EnsemblPlants:Solyc10g068340.1.1 | EnsemblPlantsGene:Solyc10g068340.1 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 |
| PFAM:PF00646 | PFscan:PS50181 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI00027698AF |
| UniProt:K4D1M4 | MapMan:19.2.2.8.1.4.6 | : | : | : | : |
Description
No Description!
Coordinates
chr10:-:65512097..65512876
Molecular Weight (calculated)
30269.4 Da
IEP (calculated)
6.728
GRAVY (calculated)
-0.162
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEQLSSEI EVSNLSEKHE VSHQSNPTIP FDLPIEIVIE IFLKLPVKSL LEIWFVSKSW HSLITSPKFI KYHLNLSANH NKYFTNHNVI LSITQPEHKF
101: KDCFVMEETD LDYHMKNSGI SFTIEGFING LVCLVNKENE VFLWNPTIRK CKKLPNFRTQ LKNEGYCTYG FGYDEIHDDY MVVCIFSIVG CPPHFQEIDI
201: YSLKKDSWQI IHCSLNVLRL IGSCKFVNGK FYWTTRINIQ SGWSITSFNL INEKWSKVEX
101: KDCFVMEETD LDYHMKNSGI SFTIEGFING LVCLVNKENE VFLWNPTIRK CKKLPNFRTQ LKNEGYCTYG FGYDEIHDDY MVVCIFSIVG CPPHFQEIDI
201: YSLKKDSWQI IHCSLNVLRL IGSCKFVNGK FYWTTRINIQ SGWSITSFNL INEKWSKVEX
001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES
Arabidopsis Description
F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.