Factsheet for Solyc10g075010.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080239	Potato	cytosol, plastid	65.35	72.73
Solyc10g068340.1.1	Tomato	cytosol	29.58	40.38
Solyc09g091710.1.1	Tomato	nucleus	42.25	37.31
Solyc09g083230.1.1	Tomato	cytosol, peroxisome, plastid	37.18	34.65
Solyc02g033040.2.1	Tomato	nucleus	32.68	34.12
Solyc09g072930.1.1	Tomato	cytosol, plasma membrane	36.34	33.42
Solyc10g052710.1.1	Tomato	cytosol	35.77	33.25
Solyc05g007530.1.1	Tomato	cytosol	33.52	31.99
Solyc05g007400.1.1	Tomato	cytosol	32.68	30.53
Solyc05g005110.1.1	Tomato	mitochondrion, plastid	32.96	28.89
KRH11340	Soybean	cytosol, peroxisome, plastid	30.99	28.72
Solyc09g072910.1.1	Tomato	plasma membrane	34.93	28.38
Solyc05g007370.1.1	Tomato	golgi, mitochondrion, plasma membrane	30.42	27.76
KRH20939	Soybean	cytosol, mitochondrion	31.55	27.59
Solyc07g052580.1.1	Tomato	cytosol, peroxisome, plastid	33.24	27.25
Solyc05g007360.1.1	Tomato	extracellular	30.7	27.18
Solyc01g067030.2.1	Tomato	extracellular	28.17	27.1
Solyc09g091690.1.1	Tomato	cytosol	29.58	27.06
Solyc05g007380.1.1	Tomato	endoplasmic reticulum, golgi	30.7	26.98
VIT_18s0041g01100.t01	Wine grape	cytosol	17.75	25.93
Solyc10g008450.1.1	Tomato	extracellular, vacuole	25.07	25.5
KRH11341	Soybean	cytosol, plastid	27.89	25.19
KRH35044	Soybean	cytosol, extracellular, golgi	25.35	25.07
Solyc01g008660.2.1	Tomato	cytosol	24.23	25.0
Solyc09g091220.1.1	Tomato	cytosol	27.61	24.62
Bra014991.1-P	Field mustard	cytosol	25.35	24.32
Solyc01g067010.2.1	Tomato	cytosol, extracellular, plasma membrane	25.35	24.26
KRH72048	Soybean	cytosol	23.94	24.08
AT3G23880.1	Thale cress	cytosol	24.51	23.9
Solyc12g099550.1.1	Tomato	cytosol	22.54	23.74
VIT_18s0041g01090.t01	Wine grape	cytosol	25.63	22.92
KRH35047	Soybean	cytosol, peroxisome, plastid	22.82	20.61

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	InterPro:F-box-assoc_dom_typ3	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	UniProt:K4D1U3
PFAM:PF00646	PFAM:PF08268	PFscan:PS50181	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	SMART:SM00256
SUPFAM:SSF50965	SUPFAM:SSF81383	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc10g075010.1	EnsemblPlants:Solyc10g075010.1.1	TIGRFAMs:TIGR01640
UniParc:UPI0002769BE5	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:58706168..58707235

Molecular Weight (calculated)

41732.3 Da

IEP (calculated)

8.435

GRAVY (calculated)

-0.140

Length

355 amino acids

Sequence
(BLAST)

001: MFICFLYLLA LTFFQIKSLR LFGRKFNGEN SASSHQNRDL INPANRCMPT EILVEILSRV PVKSLLKFRC VSKSWLALIS SPEFINSHLS LSASNNIQES
101: NLDYLMKNLE VSFLFEGSVN GLICLVNRAK KIYIWNPTIR KYKKLRDYKF ESWHFGRFIY GFGYDKLRDD YKVVLYNFHE VAIYSLKSDC WRRINHPPNG
201: GRFINTGKFL NGKLYWASVV DDVVWSITSF DLNDEKWRMV EEPPCGNDIF VLGALESNLS IMICSRTSNV DVWAMKEYEN KESWTKTFTI ICSLDRAEYF
301: LAQSFYLTKR GEFFIMSRPY HMMYEPSDNS IRYLDLKTFD YDLLADFYVQ TLVCP

Best Arabidopsis Sequence Match ( AT5G18160.1 )
(BLAST)

001: MDKQDEKKQG TTKSSSTLTT RCSHGNHISQ SNSIPLDITI EILSRLPAKS IVRSRSVSKL WSSITTTPEF IKHRSKKTSP PCVLLIFRKH DKLIVFSSPQ
101: HQNTYSHVQD YHIEIPKNGF IRRLDSVHGL ICLEGSKQLV ICNPTLKRFF PLPEPQGTGD EYNVGGFLGY EPIEGKYKAL CIVRGWNTQV LTLEIQESWR
201: VTKPGYTHWP TKDTGRCING VIYYKAIIFD RVPRHVIFGF DLRYEEFTHI EFPMRNYDRF LMVSYEGRLA LISSTSSVVE IWSLEDAGNR KWSYEQFHLC
301: LPPNTSLKGV IDAGELIYTG FSLNRSFCVV YFDPKKNNIR ETKFQGIADN QIWQPDRLGF DLVNDFYVLP NHIESFISF

Arabidopsis Description

F-box protein At5g18160 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.