CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, cytosol

Predictor Summary:

plastid 1
cytosol 2
extracellular 1
nucleus 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72048	Soybean	cytosol	47.08	47.88
KRH35047	Soybean	cytosol, peroxisome, plastid	51.81	47.33
KRH11340	Soybean	cytosol, peroxisome, plastid	38.16	35.77
KRH20939	Soybean	cytosol, mitochondrion	38.72	34.24
KRH11341	Soybean	cytosol, plastid	35.38	32.32
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	33.15	32.16
Solyc01g067030.2.1	Tomato	extracellular	32.59	31.71
PGSC0003DMT400006240	Potato	mitochondrion	28.97	31.71
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	27.3	29.88
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	31.2	29.63
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	27.58	29.55
Solyc10g008450.1.1	Tomato	extracellular, vacuole	28.69	29.51
Solyc09g091710.1.1	Tomato	nucleus	32.87	29.35
PGSC0003DMT400080382	Potato	golgi	30.64	29.26
Solyc09g083230.1.1	Tomato	cytosol, peroxisome, plastid	30.64	28.87
PGSC0003DMT400035091	Potato	mitochondrion	31.48	28.83
VIT_18s0041g01100.t01	Wine grape	cytosol	19.5	28.81
PGSC0003DMT400076274	Potato	cytosol	30.92	28.68
PGSC0003DMT400076275	Potato	nucleus	32.03	28.61
PGSC0003DMT400096925	Potato	cytosol	20.06	28.57
PGSC0003DMT400009785	Potato	cytosol	30.08	28.5
PGSC0003DMT400009709	Potato	cytosol	29.8	28.31
PGSC0003DMT400031977	Potato	cytosol	30.92	27.96
PGSC0003DMT400076282	Potato	nucleus	12.26	27.85
PGSC0003DMT400076216	Potato	cytosol	29.8	27.51
PGSC0003DMT400016504	Potato	cytosol	29.53	27.46
Solyc02g033040.2.1	Tomato	nucleus	25.91	27.35
Solyc09g091690.1.1	Tomato	cytosol	29.53	27.32
KRH51164	Soybean	cytosol	29.25	27.27
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	28.13	27.15
PGSC0003DMT400025788	Potato	cytosol	29.53	27.04
Solyc10g052710.1.1	Tomato	cytosol	28.69	26.96
PGSC0003DMT400080239	Potato	cytosol, plastid	23.96	26.96
Solyc09g072930.1.1	Tomato	cytosol, plasma membrane	28.97	26.94
Solyc05g005110.1.1	Tomato	mitochondrion, plastid	30.36	26.91
PGSC0003DMT400092235	Potato	cytosol	24.79	26.89
PGSC0003DMT400096151	Potato	cytosol	29.8	26.88
PGSC0003DMT400055337	Potato	plastid	30.36	26.85
PGSC0003DMT400095263	Potato	cytosol	20.33	26.84
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	27.58	26.76
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	27.58	26.76
Solyc05g007530.1.1	Tomato	cytosol	27.58	26.61
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	29.53	26.5
KRH11533	Soybean	cytosol	28.97	26.4
PGSC0003DMT400034123	Potato	golgi	26.74	26.16
Solyc01g067010.2.1	Tomato	cytosol, extracellular, plasma membrane	27.02	26.15
KRH36548	Soybean	cytosol, plastid	28.41	26.02
PGSC0003DMT400080292	Potato	cytosol	14.21	25.76
PGSC0003DMT400067303	Potato	extracellular	26.18	25.68
PGSC0003DMT400076284	Potato	cytosol	30.08	25.47
Solyc10g075010.1.1	Tomato	extracellular	25.07	25.35
PGSC0003DMT400085500	Potato	cytosol	27.02	25.33
KRH01989	Soybean	cytosol	27.58	25.26
PGSC0003DMT400059327	Potato	cytosol	25.63	24.93
Solyc09g091220.1.1	Tomato	cytosol	27.58	24.87
PGSC0003DMT400059330	Potato	extracellular	26.18	24.87
PGSC0003DMT400080369	Potato	nucleus	27.58	24.81
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	24.23	24.65
Solyc05g007400.1.1	Tomato	cytosol	25.91	24.47
AT3G23880.1	Thale cress	cytosol	24.79	24.45
PGSC0003DMT400090333	Potato	cytosol	20.89	24.19
PGSC0003DMT400094202	Potato	cytosol	19.22	24.04
PGSC0003DMT400093810	Potato	plastid	18.66	23.93
CDX77477	Canola	cytosol	24.51	23.78
Bra014991.1-P	Field mustard	cytosol	24.51	23.78
VIT_18s0041g01090.t01	Wine grape	cytosol	26.18	23.68
PGSC0003DMT400088797	Potato	cytosol	16.16	23.58
Solyc09g072910.1.1	Tomato	plasma membrane	28.69	23.57
PGSC0003DMT400097507	Potato	cytosol	15.6	23.53
Solyc10g068340.1.1	Tomato	cytosol	16.99	23.46
PGSC0003DMT400090382	Potato	cytosol	25.07	23.44
PGSC0003DMT400030295	Potato	cytosol	12.81	23.23
PGSC0003DMT400059329	Potato	vacuole	25.63	22.94
Solyc05g007370.1.1	Tomato	golgi, mitochondrion, plasma membrane	24.79	22.88
Solyc07g052580.1.1	Tomato	cytosol, peroxisome, plastid	27.3	22.63
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	17.27	22.46
Solyc05g007380.1.1	Tomato	endoplasmic reticulum, golgi	25.07	22.28
PGSC0003DMT400045556	Potato	cytosol	28.41	22.08
Solyc05g007360.1.1	Tomato	extracellular	24.51	21.95
PGSC0003DMT400053926	Potato	cytosol	15.6	21.29
PGSC0003DMT400015653	Potato	cytosol, plastid	28.97	21.14
PGSC0003DMT400053922	Potato	extracellular, golgi	24.51	21.05
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	9.47	18.89
PGSC0003DMT400059334	Potato	plastid	18.66	18.61
PGSC0003DMT400080293	Potato	nucleus	12.26	17.32
CDX85142	Canola	cytosol	25.07	10.96

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102670327	MapMan:19.2.2.8.1.4.6	EMBL:ACUP02006649	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_10G220200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146	UniProt:I1LDB4
InterPro:IPR001810	EnsemblPlants:KRH35044	ProteinID:KRH35044	ProteinID:KRH35044.1	PFAM:PF00646	PFAM:PF07734
PFscan:PS50181	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI00023CD8F8	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:45169037..45170462

Molecular Weight (calculated)

41145.1 Da

IEP (calculated)

8.516

GRAVY (calculated)

-0.021

Length

359 amino acids

Sequence
(BLAST)

001: MPCKLASPLW LLPEELISEI LFRVPVRSLL QFRCVCKSWK TLISHPQFAM HRLRTSIAHP NIAHQQLTSS KLVSYSVHSL LQNSSIPEQG HYYSSTSHKY
101: RILGSCNGLL CLSDINLTHV VLCNPSIRSQ SKKFQIMVSP RSCFTYYCFG YDHVNDKYKL LVVVGSFQKS VTKLYTFGAD CYCSKVIQNF PCHPTRKPGK
201: FVSGTLNWIA KRDLNNDDQQ RMILSFDLAT ETYGEVLLPD GDHDKICSPT LDVLRDCLCV CFSDCRKGHW IVWLMKEYGV PNSWTKLVTI PYIKLGICRW
301: SHLFVPLCIS ENGVLLLKTT SSKLVIYNLN DGRMDYLRIV DELGFDIHVY HESLVSPQF

Best Arabidopsis Sequence Match ( AT3G23880.1 )
(BLAST)

001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL

Arabidopsis Description

F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.