Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 8
- golgi 5
- cytosol 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400093810 | Potato | plastid | 55.56 | 35.71 |
PGSC0003DMT400088797 | Potato | cytosol | 41.67 | 30.49 |
PGSC0003DMT400053926 | Potato | cytosol | 42.78 | 29.28 |
PGSC0003DMT400059334 | Potato | plastid | 53.89 | 26.94 |
PGSC0003DMT400059329 | Potato | vacuole | 60.0 | 26.93 |
PGSC0003DMT400080292 | Potato | cytosol | 27.22 | 24.75 |
PGSC0003DMT400053922 | Potato | extracellular, golgi | 52.78 | 22.73 |
PGSC0003DMT400090382 | Potato | cytosol | 46.67 | 21.88 |
PGSC0003DMT400059327 | Potato | cytosol | 44.44 | 21.68 |
PGSC0003DMT400067303 | Potato | extracellular | 41.67 | 20.49 |
PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 40.56 | 19.62 |
PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 29.44 | 19.2 |
PGSC0003DMT400095263 | Potato | cytosol | 25.56 | 16.91 |
PGSC0003DMT400059330 | Potato | extracellular | 34.44 | 16.4 |
PGSC0003DMT400090333 | Potato | cytosol | 27.78 | 16.13 |
PGSC0003DMT400092235 | Potato | cytosol | 29.44 | 16.01 |
PGSC0003DMT400009709 | Potato | cytosol | 32.78 | 15.61 |
PGSC0003DMT400009785 | Potato | cytosol | 32.78 | 15.57 |
PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 16.11 | 15.34 |
PGSC0003DMT400094202 | Potato | cytosol | 24.44 | 15.33 |
PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 29.44 | 15.01 |
PGSC0003DMT400076275 | Potato | nucleus | 33.33 | 14.93 |
PGSC0003DMT400080382 | Potato | golgi | 30.56 | 14.63 |
PGSC0003DMT400080239 | Potato | cytosol, plastid | 25.56 | 14.42 |
VIT_18s0041g01100.t01 | Wine grape | cytosol | 18.89 | 13.99 |
PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 27.78 | 13.51 |
PGSC0003DMT400016504 | Potato | cytosol | 28.89 | 13.47 |
PGSC0003DMT400097507 | Potato | cytosol | 17.78 | 13.45 |
PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 24.44 | 13.41 |
PGSC0003DMT400031977 | Potato | cytosol | 28.89 | 13.1 |
PGSC0003DMT400016096 | Potato | cytosol | 15.0 | 13.04 |
PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 28.89 | 13.0 |
PGSC0003DMT400076284 | Potato | cytosol | 30.56 | 12.97 |
PGSC0003DMT400076216 | Potato | cytosol | 27.78 | 12.85 |
PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 26.67 | 12.7 |
PGSC0003DMT400096151 | Potato | cytosol | 27.78 | 12.56 |
PGSC0003DMT400055337 | Potato | plastid | 28.33 | 12.56 |
PGSC0003DMT400080369 | Potato | nucleus | 27.22 | 12.28 |
PGSC0003DMT400085500 | Potato | cytosol | 26.11 | 12.27 |
PGSC0003DMT400035091 | Potato | mitochondrion | 26.11 | 11.99 |
PGSC0003DMT400034123 | Potato | golgi | 24.44 | 11.99 |
PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 22.22 | 11.94 |
PGSC0003DMT400096925 | Potato | cytosol | 16.67 | 11.9 |
PGSC0003DMT400045556 | Potato | cytosol | 30.0 | 11.69 |
PGSC0003DMT400006240 | Potato | mitochondrion | 20.56 | 11.28 |
PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 22.22 | 10.81 |
PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 22.22 | 10.81 |
PGSC0003DMT400076274 | Potato | cytosol | 22.78 | 10.59 |
KRH11340 | Soybean | cytosol, peroxisome, plastid | 22.22 | 10.44 |
PGSC0003DMT400025788 | Potato | cytosol | 22.22 | 10.2 |
PGSC0003DMT400015653 | Potato | cytosol, plastid | 27.78 | 10.16 |
KRH20939 | Soybean | cytosol, mitochondrion | 22.78 | 10.1 |
VIT_18s0041g01090.t01 | Wine grape | cytosol | 22.22 | 10.08 |
PGSC0003DMT400058829 | Potato | cytosol | 20.0 | 9.89 |
Bra014991.1-P | Field mustard | cytosol | 20.0 | 9.73 |
KRH11341 | Soybean | cytosol, plastid | 21.11 | 9.67 |
KRH35044 | Soybean | cytosol, extracellular, golgi | 18.89 | 9.47 |
PGSC0003DMT400016057 | Potato | cytosol | 19.44 | 9.38 |
AT3G23880.1 | Thale cress | cytosol | 18.89 | 9.34 |
PGSC0003DMT400012000 | Potato | plastid | 18.89 | 9.19 |
PGSC0003DMT400046369 | Potato | cytosol | 20.0 | 8.91 |
KRH35047 | Soybean | cytosol, peroxisome, plastid | 19.44 | 8.91 |
PGSC0003DMT400016099 | Potato | cytosol | 17.22 | 8.42 |
KRH72048 | Soybean | cytosol | 16.11 | 8.22 |
PGSC0003DMT400080293 | Potato | nucleus | 10.56 | 7.48 |
PGSC0003DMT400076282 | Potato | nucleus | 6.11 | 6.96 |
PGSC0003DMT400030295 | Potato | cytosol | 6.67 | 6.06 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400031274 | EnsemblPlantsGene:PGSC0003DMG400011984 | InterPro:F-box-assoc_interact_dom | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 | PGSC:PGSC0003DMG400011984 |
TIGRFAMs:TIGR01640 | UniParc:UPI000295CDBC | UniProt:M1AVF8 | MapMan:35.2 | : | : |
Description
F-box domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011984]
Coordinates
chr00:+:28829038..28829666
Molecular Weight (calculated)
20283.4 Da
IEP (calculated)
5.985
GRAVY (calculated)
0.020
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPPTLLAFV VGSVNGLICL CNRAGQMFIW NPTISKSKEL LNSKCGTSIY IKYGFGYDEL HDDYKAIFVD YSYHNDNDDV SKTRNVVNVY SLRADSWTTV
101: DDQLHGIYLV NRYGDILLSL PGYIMIFDGS TKKFEHTPDV KGSNPPEIYA ESIVNPLMIS GKILLSLAGM LVLHFLFRQI
101: DDQLHGIYLV NRYGDILLSL PGYIMIFDGS TKKFEHTPDV KGSNPPEIYA ESIVNPLMIS GKILLSLAGM LVLHFLFRQI
001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES
Arabidopsis Description
F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.