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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 8
  • golgi 5
  • cytosol 1
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400093810 Potato plastid 55.56 35.71
PGSC0003DMT400088797 Potato cytosol 41.67 30.49
PGSC0003DMT400053926 Potato cytosol 42.78 29.28
PGSC0003DMT400059334 Potato plastid 53.89 26.94
PGSC0003DMT400059329 Potato vacuole 60.0 26.93
PGSC0003DMT400080292 Potato cytosol 27.22 24.75
PGSC0003DMT400053922 Potato extracellular, golgi 52.78 22.73
PGSC0003DMT400090382 Potato cytosol 46.67 21.88
PGSC0003DMT400059327 Potato cytosol 44.44 21.68
PGSC0003DMT400067303 Potato extracellular 41.67 20.49
PGSC0003DMT400059337 Potato cytosol, plasma membrane 40.56 19.62
PGSC0003DMT400096882 Potato cytosol, plasma membrane, plastid 29.44 19.2
PGSC0003DMT400095263 Potato cytosol 25.56 16.91
PGSC0003DMT400059330 Potato extracellular 34.44 16.4
PGSC0003DMT400090333 Potato cytosol 27.78 16.13
PGSC0003DMT400092235 Potato cytosol 29.44 16.01
PGSC0003DMT400009709 Potato cytosol 32.78 15.61
PGSC0003DMT400009785 Potato cytosol 32.78 15.57
PGSC0003DMT400054287 Potato cytosol, extracellular, mitochondrion, plastid 16.11 15.34
PGSC0003DMT400094202 Potato cytosol 24.44 15.33
PGSC0003DMT400094422 Potato extracellular, golgi, plastid 29.44 15.01
PGSC0003DMT400076275 Potato nucleus 33.33 14.93
PGSC0003DMT400080382 Potato golgi 30.56 14.63
PGSC0003DMT400080239 Potato cytosol, plastid 25.56 14.42
VIT_18s0041g01100.t01 Wine grape cytosol 18.89 13.99
PGSC0003DMT400058350 Potato cytosol, extracellular, plasma membrane, plastid 27.78 13.51
PGSC0003DMT400016504 Potato cytosol 28.89 13.47
PGSC0003DMT400097507 Potato cytosol 17.78 13.45
PGSC0003DMT400009708 Potato cytosol, peroxisome, plastid 24.44 13.41
PGSC0003DMT400031977 Potato cytosol 28.89 13.1
PGSC0003DMT400016096 Potato cytosol 15.0 13.04
PGSC0003DMT400015598 Potato cytosol, nucleus, peroxisome, plastid 28.89 13.0
PGSC0003DMT400076284 Potato cytosol 30.56 12.97
PGSC0003DMT400076216 Potato cytosol 27.78 12.85
PGSC0003DMT400035180 Potato golgi, nucleus, plastid 26.67 12.7
PGSC0003DMT400096151 Potato cytosol 27.78 12.56
PGSC0003DMT400055337 Potato plastid 28.33 12.56
PGSC0003DMT400080369 Potato nucleus 27.22 12.28
PGSC0003DMT400085500 Potato cytosol 26.11 12.27
PGSC0003DMT400035091 Potato mitochondrion 26.11 11.99
PGSC0003DMT400034123 Potato golgi 24.44 11.99
PGSC0003DMT400055826 Potato cytosol, extracellular, plasma membrane 22.22 11.94
PGSC0003DMT400096925 Potato cytosol 16.67 11.9
PGSC0003DMT400045556 Potato cytosol 30.0 11.69
PGSC0003DMT400006240 Potato mitochondrion 20.56 11.28
PGSC0003DMT400008824 Potato extracellular, golgi, plastid 22.22 10.81
PGSC0003DMT400008825 Potato extracellular, golgi, plastid 22.22 10.81
PGSC0003DMT400076274 Potato cytosol 22.78 10.59
KRH11340 Soybean cytosol, peroxisome, plastid 22.22 10.44
PGSC0003DMT400025788 Potato cytosol 22.22 10.2
PGSC0003DMT400015653 Potato cytosol, plastid 27.78 10.16
KRH20939 Soybean cytosol, mitochondrion 22.78 10.1
VIT_18s0041g01090.t01 Wine grape cytosol 22.22 10.08
PGSC0003DMT400058829 Potato cytosol 20.0 9.89
Bra014991.1-P Field mustard cytosol 20.0 9.73
KRH11341 Soybean cytosol, plastid 21.11 9.67
KRH35044 Soybean cytosol, extracellular, golgi 18.89 9.47
PGSC0003DMT400016057 Potato cytosol 19.44 9.38
AT3G23880.1 Thale cress cytosol 18.89 9.34
PGSC0003DMT400012000 Potato plastid 18.89 9.19
PGSC0003DMT400046369 Potato cytosol 20.0 8.91
KRH35047 Soybean cytosol, peroxisome, plastid 19.44 8.91
PGSC0003DMT400016099 Potato cytosol 17.22 8.42
KRH72048 Soybean cytosol 16.11 8.22
PGSC0003DMT400080293 Potato nucleus 10.56 7.48
PGSC0003DMT400076282 Potato nucleus 6.11 6.96
PGSC0003DMT400030295 Potato cytosol 6.67 6.06
Protein Annotations
EnsemblPlants:PGSC0003DMT400031274EnsemblPlantsGene:PGSC0003DMG400011984InterPro:F-box-assoc_interact_domPANTHER:PTHR44355PANTHER:PTHR44355:SF1PGSC:PGSC0003DMG400011984
TIGRFAMs:TIGR01640UniParc:UPI000295CDBCUniProt:M1AVF8MapMan:35.2::
Description
F-box domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011984]
Coordinates
chr00:+:28829038..28829666
Molecular Weight (calculated)
20283.4 Da
IEP (calculated)
5.985
GRAVY (calculated)
0.020
Length
180 amino acids
Sequence
(BLAST)
001: MDPPTLLAFV VGSVNGLICL CNRAGQMFIW NPTISKSKEL LNSKCGTSIY IKYGFGYDEL HDDYKAIFVD YSYHNDNDDV SKTRNVVNVY SLRADSWTTV
101: DDQLHGIYLV NRYGDILLSL PGYIMIFDGS TKKFEHTPDV KGSNPPEIYA ESIVNPLMIS GKILLSLAGM LVLHFLFRQI
Best Arabidopsis Sequence Match ( AT3G06240.1 )
(BLAST)
001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES
Arabidopsis Description
F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.