Factsheet for PGSC0003DMT400058829

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016099	Potato	cytosol	49.18	48.64
PGSC0003DMT400016057	Potato	cytosol	47.53	46.38
PGSC0003DMT400016096	Potato	cytosol	26.1	45.89
PGSC0003DMT400012000	Potato	plastid	45.88	45.14
Bra001187.1-P	Field mustard	cytosol	20.88	28.68
CDY08063	Canola	cytosol	30.22	27.36
CDY58343	Canola	cytosol	29.67	26.73
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	24.45	26.57
PGSC0003DMT400080239	Potato	cytosol, plastid	23.08	26.33
PGSC0003DMT400080382	Potato	golgi	27.2	26.33
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	26.65	26.22
PGSC0003DMT400080369	Potato	nucleus	28.57	26.07
AT3G06240.1	Thale cress	cytosol	30.49	26.0
PGSC0003DMT400031977	Potato	cytosol	28.02	25.69
PGSC0003DMT400097507	Potato	cytosol	16.76	25.63
PGSC0003DMT400096925	Potato	cytosol	17.58	25.4
PGSC0003DMT400016504	Potato	cytosol	26.92	25.39
PGSC0003DMT400034123	Potato	golgi	25.55	25.34
PGSC0003DMT400076274	Potato	cytosol	26.92	25.32
PGSC0003DMT400090333	Potato	cytosol	21.43	25.16
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	25.55	25.14
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	25.55	25.14
PGSC0003DMT400092235	Potato	cytosol	22.8	25.08
PGSC0003DMT400009785	Potato	cytosol	26.1	25.07
PGSC0003DMT400009709	Potato	cytosol	25.82	24.87
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	22.25	24.7
PGSC0003DMT400094202	Potato	cytosol	19.23	24.39
PGSC0003DMT400076275	Potato	nucleus	26.65	24.13
PGSC0003DMT400006240	Potato	mitochondrion	21.7	24.09
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	23.35	24.08
PGSC0003DMT400067303	Potato	extracellular	24.18	24.04
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	26.37	24.0
PGSC0003DMT400096151	Potato	cytosol	26.1	23.87
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	24.73	23.81
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	24.18	23.66
PGSC0003DMT400055337	Potato	plastid	26.37	23.65
PGSC0003DMT400059327	Potato	cytosol	23.9	23.58
PGSC0003DMT400025788	Potato	cytosol	25.27	23.47
PGSC0003DMT400076216	Potato	cytosol	25.0	23.39
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	12.09	23.28
PGSC0003DMT400085500	Potato	cytosol	24.45	23.24
PGSC0003DMT400046369	Potato	cytosol	25.27	22.77
PGSC0003DMT400035091	Potato	mitochondrion	24.45	22.7
PGSC0003DMT400095263	Potato	cytosol	16.76	22.43
PGSC0003DMT400076284	Potato	cytosol	25.82	22.17
PGSC0003DMT400076282	Potato	nucleus	9.62	22.15
PGSC0003DMT400090382	Potato	cytosol	23.35	22.14
PGSC0003DMT400059330	Potato	extracellular	22.8	21.96
PGSC0003DMT400080292	Potato	cytosol	11.81	21.72
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	16.21	21.38
PGSC0003DMT400030295	Potato	cytosol	11.54	21.21
PGSC0003DMT400045556	Potato	cytosol	26.1	20.56
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	9.89	20.0
PGSC0003DMT400059329	Potato	vacuole	21.98	19.95
PGSC0003DMT400088797	Potato	cytosol	13.46	19.92
PGSC0003DMT400053926	Potato	cytosol	14.29	19.77
PGSC0003DMT400015653	Potato	cytosol, plastid	26.37	19.51
PGSC0003DMT400093810	Potato	plastid	14.84	19.29
PGSC0003DMT400059334	Potato	plastid	17.31	17.5
PGSC0003DMT400053922	Potato	extracellular, golgi	20.05	17.46
PGSC0003DMT400080293	Potato	nucleus	9.62	13.78

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102583336	MapMan:19.2.2.8.1.4.6	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810
UniProt:M1C3D7	PFAM:PF00646	PFAM:PF07734	EnsemblPlantsGene:PGSC0003DMG400022858	PGSC:PGSC0003DMG400022858	EnsemblPlants:PGSC0003DMT400058829
PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI000294EC44	RefSeq:XP_006356975.1	SEG:seg	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022858]

Coordinates

chr1:-:60036805..60038756

Molecular Weight (calculated)

42236.3 Da

IEP (calculated)

4.767

GRAVY (calculated)

-0.157

Length

364 amino acids

Sequence
(BLAST)

001: MSKGEILPQD IIIDILSRLP AKSIGQYRCV SNQWYNFLSH PQFIKFHFTL HAHKQETKLI FISDSDDLHT ITFNRNPQNI ILDAISTNLN FQNNWLSIAC
101: SCNGLVLVEN QEHIMYLINP TTLDYHRIPV FHLGLPQQSS YREYGFGYDF ASDDYKVVNL SRYRKGNIDT TFVDVYSVRM GLWRRLESLP YDDVLSERGG
201: ASGVLVNGVL HWMASKASSF VIIGFDLSDE KFFEVPAPTN LYGNELDWYE LRSFRGCLCM FCALLESEID VWVMKEYRVE ESWTTFRIDR MDLENGSVPF
301: CPISDDDVVL SVDRDRLTVY NIKEDQWRYM EVDGLTYMFE RTGIFIESLV LPMLGKGTEG YHIA

Best Arabidopsis Sequence Match ( AT3G06240.1 )
(BLAST)

001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES

Arabidopsis Description

F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.