Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g067030.2.1 | Tomato | extracellular | 90.0 | 90.24 |
| PGSC0003DMT400076274 | Potato | cytosol | 51.89 | 49.61 |
| PGSC0003DMT400025788 | Potato | cytosol | 48.92 | 46.17 |
| PGSC0003DMT400076275 | Potato | nucleus | 39.19 | 36.07 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 37.3 | 36.03 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 35.95 | 35.19 |
| PGSC0003DMT400096151 | Potato | cytosol | 37.84 | 35.18 |
| PGSC0003DMT400034123 | Potato | golgi | 34.86 | 35.15 |
| PGSC0003DMT400092235 | Potato | cytosol | 30.81 | 34.44 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 34.59 | 34.41 |
| PGSC0003DMT400080382 | Potato | golgi | 34.86 | 34.31 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 30.27 | 34.15 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 30.0 | 33.84 |
| PGSC0003DMT400080369 | Potato | nucleus | 36.49 | 33.83 |
| PGSC0003DMT400095263 | Potato | cytosol | 24.86 | 33.82 |
| KRH20939 | Soybean | cytosol, mitochondrion | 37.03 | 33.74 |
| PGSC0003DMT400016504 | Potato | cytosol | 35.14 | 33.68 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 35.41 | 33.42 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 32.16 | 33.15 |
| KRH11341 | Soybean | cytosol, plastid | 35.14 | 33.08 |
| PGSC0003DMT400055337 | Potato | plastid | 36.22 | 33.0 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 35.68 | 33.0 |
| PGSC0003DMT400090333 | Potato | cytosol | 27.57 | 32.9 |
| PGSC0003DMT400090382 | Potato | cytosol | 34.05 | 32.81 |
| PGSC0003DMT400076216 | Potato | cytosol | 34.32 | 32.65 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 28.11 | 32.6 |
| PGSC0003DMT400059327 | Potato | cytosol | 32.43 | 32.52 |
| PGSC0003DMT400067303 | Potato | extracellular | 32.16 | 32.51 |
| PGSC0003DMT400009785 | Potato | cytosol | 33.24 | 32.45 |
| PGSC0003DMT400085500 | Potato | cytosol | 33.51 | 32.38 |
| PGSC0003DMT400076282 | Potato | nucleus | 13.78 | 32.28 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 29.19 | 32.24 |
| PGSC0003DMT400076284 | Potato | cytosol | 36.76 | 32.08 |
| PGSC0003DMT400059330 | Potato | extracellular | 32.7 | 32.01 |
| PGSC0003DMT400031977 | Potato | cytosol | 34.32 | 31.99 |
| PGSC0003DMT400009709 | Potato | cytosol | 32.43 | 31.75 |
| PGSC0003DMT400096925 | Potato | cytosol | 21.35 | 31.35 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 20.54 | 31.28 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 31.08 | 31.08 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 31.08 | 31.08 |
| PGSC0003DMT400094202 | Potato | cytosol | 24.05 | 31.01 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 29.19 | 30.59 |
| PGSC0003DMT400080292 | Potato | cytosol | 15.95 | 29.8 |
| PGSC0003DMT400097507 | Potato | cytosol | 18.65 | 28.99 |
| PGSC0003DMT400030295 | Potato | cytosol | 15.41 | 28.79 |
| KRH72048 | Soybean | cytosol | 26.76 | 28.05 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 29.73 | 27.99 |
| PGSC0003DMT400059329 | Potato | vacuole | 30.27 | 27.93 |
| PGSC0003DMT400093810 | Potato | plastid | 21.08 | 27.86 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 13.51 | 27.78 |
| AT3G23880.1 | Thale cress | cytosol | 27.03 | 27.47 |
| PGSC0003DMT400046369 | Potato | cytosol | 29.19 | 26.73 |
| PGSC0003DMT400058829 | Potato | cytosol | 26.22 | 26.65 |
| PGSC0003DMT400053926 | Potato | cytosol | 18.92 | 26.62 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 19.73 | 26.45 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 28.38 | 26.45 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 35.14 | 26.42 |
| PGSC0003DMT400045556 | Potato | cytosol | 32.97 | 26.41 |
| Bra014991.1-P | Field mustard | cytosol | 26.22 | 26.22 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 13.24 | 25.93 |
| PGSC0003DMT400012000 | Potato | plastid | 25.68 | 25.68 |
| PGSC0003DMT400059334 | Potato | plastid | 24.86 | 25.56 |
| PGSC0003DMT400016057 | Potato | cytosol | 25.68 | 25.47 |
| PGSC0003DMT400016099 | Potato | cytosol | 25.14 | 25.27 |
| PGSC0003DMT400088797 | Potato | cytosol | 16.76 | 25.2 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 27.57 | 24.4 |
| PGSC0003DMT400016096 | Potato | cytosol | 13.24 | 23.67 |
| PGSC0003DMT400080293 | Potato | nucleus | 12.7 | 18.5 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:102605926 | MapMan:19.2.2.8.1.4.6 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | UniProt:M1C2I9 |
| PFAM:PF00646 | EnsemblPlantsGene:PGSC0003DMG400022664 | PGSC:PGSC0003DMG400022664 | EnsemblPlants:PGSC0003DMT400058350 | PFscan:PS50181 | PANTHER:PTHR44355 |
| PANTHER:PTHR44355:SF1 | SMART:SM00256 | SUPFAM:SSF50965 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI000296B6AF |
| RefSeq:XP_006342788.1 | : | : | : | : | : |
Description
F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022664]
Coordinates
chr1:-:58222546..58224447
Molecular Weight (calculated)
42464.5 Da
IEP (calculated)
5.663
GRAVY (calculated)
-0.120
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHESESVSL LPPEVISEIL VRLPVKSLLM MRCVSKSWLS LISTRQFIKT HLEFSTNKQD FAHDILLLSS SSYEHTLRFY TCSLYAIMYQ ESPHVPDDLD
101: FPCKDPLVEY NFVGSCDGLL CISGGARDLF LWNPSIRKSK KLPMSGSNVH CSSYLAYGVG YNECQDDYKV VEVMGSSHSE YGFQNEFRVY SLRTNSWKMI
201: QEYPGVIFCN DPAKFVNGRL HWIATRVSDK NDSWFISSLN LVDETYENVG LPDLVYGNFD WELGILGGNL CVFCDYYKVQ MDVWVMKAYG LVESWTKVAS
301: IPYFRAIEHS PFPVFISHND EILLQHGSSL LIYNSTDNTF KHPQVQIHHG YEIQFSLYTK SLVSPHFVED
101: FPCKDPLVEY NFVGSCDGLL CISGGARDLF LWNPSIRKSK KLPMSGSNVH CSSYLAYGVG YNECQDDYKV VEVMGSSHSE YGFQNEFRVY SLRTNSWKMI
201: QEYPGVIFCN DPAKFVNGRL HWIATRVSDK NDSWFISSLN LVDETYENVG LPDLVYGNFD WELGILGGNL CVFCDYYKVQ MDVWVMKAYG LVESWTKVAS
301: IPYFRAIEHS PFPVFISHND EILLQHGSSL LIYNSTDNTF KHPQVQIHHG YEIQFSLYTK SLVSPHFVED
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.