Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 46.17 | 48.92 |
| PGSC0003DMT400076274 | Potato | cytosol | 46.94 | 47.55 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 31.89 | 33.07 |
| PGSC0003DMT400096151 | Potato | cytosol | 33.42 | 32.91 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 27.04 | 32.32 |
| PGSC0003DMT400009785 | Potato | cytosol | 31.12 | 32.19 |
| PGSC0003DMT400080382 | Potato | golgi | 30.87 | 32.18 |
| PGSC0003DMT400085500 | Potato | cytosol | 31.38 | 32.11 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 26.79 | 32.01 |
| PGSC0003DMT400076275 | Potato | nucleus | 32.65 | 31.84 |
| PGSC0003DMT400092235 | Potato | cytosol | 26.53 | 31.42 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 31.89 | 31.25 |
| PGSC0003DMT400009709 | Potato | cytosol | 30.1 | 31.22 |
| PGSC0003DMT400096925 | Potato | cytosol | 19.9 | 30.95 |
| PGSC0003DMT400080369 | Potato | nucleus | 31.12 | 30.58 |
| PGSC0003DMT400034123 | Potato | golgi | 28.57 | 30.52 |
| PGSC0003DMT400016504 | Potato | cytosol | 29.85 | 30.31 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 29.34 | 30.03 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 28.32 | 30.0 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 29.85 | 29.85 |
| PGSC0003DMT400055337 | Potato | plastid | 30.87 | 29.8 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 24.23 | 29.78 |
| PGSC0003DMT400095263 | Potato | cytosol | 20.66 | 29.78 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 28.06 | 29.73 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 27.04 | 29.53 |
| PGSC0003DMT400076284 | Potato | cytosol | 31.38 | 29.01 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 24.49 | 28.66 |
| KRH11341 | Soybean | cytosol, plastid | 28.57 | 28.5 |
| PGSC0003DMT400031977 | Potato | cytosol | 28.83 | 28.46 |
| PGSC0003DMT400059327 | Potato | cytosol | 26.53 | 28.18 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 26.53 | 27.96 |
| KRH20939 | Soybean | cytosol, mitochondrion | 28.83 | 27.83 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 25.0 | 27.76 |
| PGSC0003DMT400045556 | Potato | cytosol | 32.14 | 27.27 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 16.84 | 27.16 |
| PGSC0003DMT400090333 | Potato | cytosol | 21.43 | 27.1 |
| PGSC0003DMT400090382 | Potato | cytosol | 26.28 | 26.82 |
| PGSC0003DMT400067303 | Potato | extracellular | 25.0 | 26.78 |
| PGSC0003DMT400076216 | Potato | cytosol | 26.53 | 26.74 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 26.79 | 26.72 |
| PGSC0003DMT400030295 | Potato | cytosol | 13.27 | 26.26 |
| KRH72048 | Soybean | cytosol | 23.21 | 25.78 |
| PGSC0003DMT400094202 | Potato | cytosol | 18.62 | 25.44 |
| PGSC0003DMT400076282 | Potato | nucleus | 10.2 | 25.32 |
| PGSC0003DMT400058829 | Potato | cytosol | 23.47 | 25.27 |
| PGSC0003DMT400046369 | Potato | cytosol | 26.02 | 25.25 |
| PGSC0003DMT400059330 | Potato | extracellular | 24.23 | 25.13 |
| PGSC0003DMT400016099 | Potato | cytosol | 23.47 | 25.0 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 11.99 | 24.87 |
| PGSC0003DMT400097507 | Potato | cytosol | 15.05 | 24.79 |
| PGSC0003DMT400080292 | Potato | cytosol | 12.5 | 24.75 |
| PGSC0003DMT400093810 | Potato | plastid | 17.6 | 24.64 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 30.61 | 24.39 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 24.49 | 24.18 |
| PGSC0003DMT400012000 | Potato | plastid | 22.7 | 24.05 |
| AT3G23880.1 | Thale cress | cytosol | 22.19 | 23.9 |
| Bra014991.1-P | Field mustard | cytosol | 21.94 | 23.24 |
| PGSC0003DMT400016057 | Potato | cytosol | 21.94 | 23.06 |
| PGSC0003DMT400088797 | Potato | cytosol | 14.03 | 22.36 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 10.2 | 22.22 |
| PGSC0003DMT400059329 | Potato | vacuole | 22.7 | 22.19 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 15.56 | 22.1 |
| PGSC0003DMT400059334 | Potato | plastid | 19.9 | 21.67 |
| PGSC0003DMT400053926 | Potato | cytosol | 14.29 | 21.29 |
| PGSC0003DMT400016096 | Potato | cytosol | 10.97 | 20.77 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 21.94 | 20.57 |
| PGSC0003DMT400080293 | Potato | nucleus | 9.44 | 14.57 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400025788 | EnsemblPlantsGene:PGSC0003DMG400009957 | EntrezGene:102582817 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR44355 | PFAM:PF00646 |
| PGSC:PGSC0003DMG400009957 | RefSeq:XP_006342086.1 | SEG:seg | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI000294D820 |
| UniProt:M1AM24 | MapMan:19.2.2.8.1.4.6 | : | : | : | : |
Description
F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009957]
Coordinates
chr4:-:71223587..71225655
Molecular Weight (calculated)
44828.3 Da
IEP (calculated)
7.859
GRAVY (calculated)
-0.254
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MESPPPPPME TSKRRAAATA SIASLTNDNS VLPIELIFFE ILIRLPVKTL LKMRSVSKSW ISRISTPEFV KAHLNFSANN REFAHHRVLS IRSGSHIHDD
101: GHITRWRYFR TFSLYAILYG ESPCFPVELH NFGVSYNVLG SCDGLFVISK TWYDNDIENL FLWNPSIRKL SKLPYSGIDA RKRRFAYGFG YIECQNDYQI
201: VEIVASKPSY LIADISVYSL RNNSWKTIQE FPIISLPENV KFVKGKLHWI TGGSSGNNAT WFNPGDEKFG NVALPNPSGD TFNWKFVSSS GNLCMTCDYR
301: NKIDVWIMKE YGLAESWTIV GSIPKFVNKV VRPIFISHND EILLQDVSGL LWWYVSRDDG SFDRPEDQTR CEYDRGSELN LYIESLVSPN SP
101: GHITRWRYFR TFSLYAILYG ESPCFPVELH NFGVSYNVLG SCDGLFVISK TWYDNDIENL FLWNPSIRKL SKLPYSGIDA RKRRFAYGFG YIECQNDYQI
201: VEIVASKPSY LIADISVYSL RNNSWKTIQE FPIISLPENV KFVKGKLHWI TGGSSGNNAT WFNPGDEKFG NVALPNPSGD TFNWKFVSSS GNLCMTCDYR
301: NKIDVWIMKE YGLAESWTIV GSIPKFVNKV VRPIFISHND EILLQDVSGL LWWYVSRDDG SFDRPEDQTR CEYDRGSELN LYIESLVSPN SP
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.