Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g007530.1.1 | Tomato | cytosol | 87.9 | 87.9 |
| PGSC0003DMT400059330 | Potato | extracellular | 84.14 | 82.8 |
| PGSC0003DMT400067303 | Potato | extracellular | 70.16 | 71.31 |
| PGSC0003DMT400080293 | Potato | nucleus | 38.17 | 55.91 |
| PGSC0003DMT400090382 | Potato | cytosol | 51.88 | 50.26 |
| PGSC0003DMT400059327 | Potato | cytosol | 48.92 | 49.32 |
| PGSC0003DMT400093810 | Potato | plastid | 36.56 | 48.57 |
| PGSC0003DMT400080292 | Potato | cytosol | 24.46 | 45.96 |
| PGSC0003DMT400088797 | Potato | cytosol | 28.49 | 43.09 |
| PGSC0003DMT400059329 | Potato | vacuole | 45.16 | 41.9 |
| PGSC0003DMT400076275 | Potato | nucleus | 44.35 | 41.04 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 19.62 | 40.56 |
| PGSC0003DMT400080382 | Potato | golgi | 39.78 | 39.36 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 34.68 | 39.33 |
| PGSC0003DMT400053926 | Potato | cytosol | 27.69 | 39.16 |
| PGSC0003DMT400009785 | Potato | cytosol | 39.78 | 39.05 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 28.23 | 38.04 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 42.74 | 38.04 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 36.02 | 37.96 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 32.26 | 37.62 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 37.9 | 37.3 |
| PGSC0003DMT400031977 | Potato | cytosol | 39.52 | 37.03 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 39.25 | 36.5 |
| PGSC0003DMT400095263 | Potato | cytosol | 26.61 | 36.4 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 31.99 | 36.28 |
| PGSC0003DMT400009709 | Potato | cytosol | 36.83 | 36.24 |
| PGSC0003DMT400016504 | Potato | cytosol | 37.37 | 36.01 |
| PGSC0003DMT400096925 | Potato | cytosol | 24.19 | 35.71 |
| PGSC0003DMT400059334 | Potato | plastid | 34.14 | 35.28 |
| PGSC0003DMT400055337 | Potato | plastid | 38.44 | 35.22 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 37.1 | 35.2 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 34.41 | 34.59 |
| PGSC0003DMT400080369 | Potato | nucleus | 37.1 | 34.59 |
| PGSC0003DMT400096151 | Potato | cytosol | 35.48 | 33.17 |
| PGSC0003DMT400076284 | Potato | cytosol | 37.37 | 32.78 |
| PGSC0003DMT400092235 | Potato | cytosol | 29.03 | 32.63 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 28.49 | 31.64 |
| PGSC0003DMT400085500 | Potato | cytosol | 32.53 | 31.59 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 31.99 | 31.07 |
| PGSC0003DMT400045556 | Potato | cytosol | 38.44 | 30.95 |
| PGSC0003DMT400076282 | Potato | nucleus | 12.9 | 30.38 |
| PGSC0003DMT400090333 | Potato | cytosol | 25.27 | 30.32 |
| PGSC0003DMT400094202 | Potato | cytosol | 23.39 | 30.31 |
| KRH11341 | Soybean | cytosol, plastid | 31.45 | 29.77 |
| PGSC0003DMT400076216 | Potato | cytosol | 30.91 | 29.56 |
| KRH20939 | Soybean | cytosol, mitochondrion | 32.26 | 29.56 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 38.98 | 29.47 |
| PGSC0003DMT400076274 | Potato | cytosol | 30.38 | 29.2 |
| PGSC0003DMT400097507 | Potato | cytosol | 18.28 | 28.57 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 27.15 | 28.13 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 18.01 | 27.57 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 27.15 | 27.3 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 27.15 | 27.3 |
| PGSC0003DMT400034123 | Potato | golgi | 26.61 | 26.98 |
| PGSC0003DMT400025788 | Potato | cytosol | 27.96 | 26.53 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 27.69 | 26.21 |
| KRH72048 | Soybean | cytosol | 24.73 | 26.06 |
| Bra014991.1-P | Field mustard | cytosol | 25.27 | 25.41 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 26.88 | 25.19 |
| PGSC0003DMT400012000 | Potato | plastid | 24.73 | 24.86 |
| AT3G23880.1 | Thale cress | cytosol | 23.92 | 24.45 |
| PGSC0003DMT400058829 | Potato | cytosol | 23.66 | 24.18 |
| PGSC0003DMT400016096 | Potato | cytosol | 13.17 | 23.67 |
| PGSC0003DMT400046369 | Potato | cytosol | 24.73 | 22.77 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 11.56 | 22.75 |
| PGSC0003DMT400016099 | Potato | cytosol | 21.77 | 22.01 |
| PGSC0003DMT400016057 | Potato | cytosol | 21.51 | 21.45 |
| PGSC0003DMT400030295 | Potato | cytosol | 11.02 | 20.71 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:107058042 | MapMan:19.2.2.8.1.4.6 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | UniProt:M1C448 |
| PFAM:PF00646 | PFAM:PF07734 | EnsemblPlantsGene:PGSC0003DMG400023055 | PGSC:PGSC0003DMG400023055 | EnsemblPlants:PGSC0003DMT400059337 | PFscan:PS50181 |
| PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI000294BB2B |
| RefSeq:XP_015158819.1 | : | : | : | : | : |
Description
F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023055]
Coordinates
chr5:-:5403492..5404610
Molecular Weight (calculated)
42328.0 Da
IEP (calculated)
5.269
GRAVY (calculated)
0.047
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELIIFVPP HEIIIEILLK VPPKSLLKFT CVSKSWLELI SSVKFIKNHL KLTANDKEYS HHRIIFQEPA CNFKVCCLPS MLNKERSTEL FDIGSPMENP
101: TFYPWIVGSV NGLICLYSKI EETVPWNPTI NKSKKLPTFG ANLRNGCSYY LKYGFGYDET RDDYKVVVIQ CIYEDSSSYD TVVNIYSLRA DSWRIINKFQ
201: GNFLVNSPGK FVDGKLYWAL SADVDTFNMC NIISLDLADE TWRRLELPDS YGKGSYPLAL GVVGSHLSVL CLNCIEGTNS DVWIRKDCAV EVSWTKIFTV
301: DHPKDLGEFI FFTSIFSVPC YQSNKDEILL LLPSVILTYN GSTRQVKVID RFEECAAAEI YVESLVDPLL IS
101: TFYPWIVGSV NGLICLYSKI EETVPWNPTI NKSKKLPTFG ANLRNGCSYY LKYGFGYDET RDDYKVVVIQ CIYEDSSSYD TVVNIYSLRA DSWRIINKFQ
201: GNFLVNSPGK FVDGKLYWAL SADVDTFNMC NIISLDLADE TWRRLELPDS YGKGSYPLAL GVVGSHLSVL CLNCIEGTNS DVWIRKDCAV EVSWTKIFTV
301: DHPKDLGEFI FFTSIFSVPC YQSNKDEILL LLPSVILTYN GSTRQVKVID RFEECAAAEI YVESLVDPLL IS
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.