Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g091710.1.1 | Tomato | nucleus | 93.53 | 93.53 |
| PGSC0003DMT400080369 | Potato | nucleus | 57.96 | 58.4 |
| PGSC0003DMT400055337 | Potato | plastid | 55.72 | 55.17 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 52.24 | 52.5 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 48.76 | 51.85 |
| PGSC0003DMT400080382 | Potato | golgi | 48.01 | 51.33 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 41.79 | 51.22 |
| PGSC0003DMT400096151 | Potato | cytosol | 50.5 | 51.01 |
| PGSC0003DMT400085500 | Potato | cytosol | 48.26 | 50.65 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 49.25 | 50.51 |
| PGSC0003DMT400009785 | Potato | cytosol | 46.77 | 49.6 |
| PGSC0003DMT400016504 | Potato | cytosol | 47.01 | 48.96 |
| PGSC0003DMT400094202 | Potato | cytosol | 34.33 | 48.08 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 39.05 | 47.87 |
| PGSC0003DMT400095263 | Potato | cytosol | 32.34 | 47.79 |
| PGSC0003DMT400090333 | Potato | cytosol | 36.82 | 47.74 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 37.56 | 47.34 |
| PGSC0003DMT400092235 | Potato | cytosol | 38.31 | 46.53 |
| PGSC0003DMT400009709 | Potato | cytosol | 43.53 | 46.3 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 39.8 | 45.33 |
| PGSC0003DMT400031977 | Potato | cytosol | 44.03 | 44.58 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 41.04 | 44.35 |
| PGSC0003DMT400045556 | Potato | cytosol | 50.75 | 44.16 |
| PGSC0003DMT400076282 | Potato | nucleus | 17.16 | 43.67 |
| PGSC0003DMT400067303 | Potato | extracellular | 38.31 | 42.08 |
| PGSC0003DMT400076284 | Potato | cytosol | 43.78 | 41.51 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 50.75 | 41.46 |
| PGSC0003DMT400059330 | Potato | extracellular | 38.56 | 41.01 |
| PGSC0003DMT400097507 | Potato | cytosol | 24.13 | 40.76 |
| PGSC0003DMT400096925 | Potato | cytosol | 24.88 | 39.68 |
| PGSC0003DMT400059327 | Potato | cytosol | 36.32 | 39.57 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 36.07 | 39.19 |
| PGSC0003DMT400090382 | Potato | cytosol | 36.82 | 38.54 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 36.07 | 37.86 |
| PGSC0003DMT400093810 | Potato | plastid | 25.62 | 36.79 |
| KRH20939 | Soybean | cytosol, mitochondrion | 36.57 | 36.21 |
| PGSC0003DMT400080292 | Potato | cytosol | 17.66 | 35.86 |
| KRH11341 | Soybean | cytosol, plastid | 34.83 | 35.62 |
| PGSC0003DMT400076216 | Potato | cytosol | 32.84 | 33.93 |
| PGSC0003DMT400076274 | Potato | cytosol | 32.34 | 33.59 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 27.86 | 33.43 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 14.93 | 33.33 |
| PGSC0003DMT400059329 | Potato | vacuole | 33.08 | 33.17 |
| PGSC0003DMT400025788 | Potato | cytosol | 31.84 | 32.65 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 28.61 | 32.03 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 29.35 | 31.89 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 29.35 | 31.89 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 19.15 | 31.69 |
| PGSC0003DMT400034123 | Potato | golgi | 28.86 | 31.61 |
| PGSC0003DMT400088797 | Potato | cytosol | 18.91 | 30.89 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 21.14 | 30.8 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 30.1 | 30.48 |
| PGSC0003DMT400053926 | Potato | cytosol | 19.9 | 30.42 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 31.09 | 29.9 |
| Bra014991.1-P | Field mustard | cytosol | 26.62 | 28.92 |
| PGSC0003DMT400059334 | Potato | plastid | 25.87 | 28.89 |
| AT3G23880.1 | Thale cress | cytosol | 25.87 | 28.57 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 27.61 | 28.24 |
| PGSC0003DMT400012000 | Potato | plastid | 25.87 | 28.11 |
| KRH72048 | Soybean | cytosol | 24.63 | 28.05 |
| PGSC0003DMT400030295 | Potato | cytosol | 13.18 | 26.77 |
| PGSC0003DMT400046369 | Potato | cytosol | 26.87 | 26.73 |
| PGSC0003DMT400058829 | Potato | cytosol | 24.13 | 26.65 |
| PGSC0003DMT400080293 | Potato | nucleus | 16.42 | 25.98 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 12.19 | 25.93 |
| PGSC0003DMT400016099 | Potato | cytosol | 22.89 | 25.0 |
| PGSC0003DMT400016096 | Potato | cytosol | 12.44 | 24.15 |
| PGSC0003DMT400016057 | Potato | cytosol | 22.14 | 23.86 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400076275 | EnsemblPlantsGene:PGSC0003DMG400029655 | EntrezGene:102585877 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR44355 |
| PANTHER:PTHR44355:SF1 | PFAM:PF00646 | PFscan:PS50181 | PGSC:PGSC0003DMG400029655 | RefSeq:XP_006360353.1 | SMART:SM00256 |
| SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0002965389 | UniProt:M1CWH5 | MapMan:19.2.2.8.1.4.6 | : |
Description
F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029655]
Coordinates
chr9:-:58581556..58582764
Molecular Weight (calculated)
45957.6 Da
IEP (calculated)
4.834
GRAVY (calculated)
-0.336
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MESEEDESTH QNSKRSKPIN QSQFPSTSMQ DSTFTTPNLP EELITEILKR VPVKSLLQFR CVSKSWLGII SSSDFVKTHL SLSANDKEYK HHRLMLSFVQ
101: PEYNLKDCSL GSLLYGSVTE AFDLDYPMKN PVKSVWIVGS VNGLICVAIE ENDLFIWNPS IRKFKRLPDS RPTLRCGYYF MYGFGYDEVH DDYKVVGIFC
201: IFGAGGSYDV EVKIYGLKSD SWRNVDDFQG GVLLNDSGKF VKGKLHWATT ARLGEYNGWD IISIDLKDEK WGKIEQPCYE KGNFDFVLGV LEDNLSVLCN
301: YNKTRADVWV MKDYGVKDSW EKMYTISCPN DPGKYMFSPP LCMSKKGEIL LVFGSIFMIY NPSDDSIRYP EVTNFDACLE AEIYTESLIS PILQNEPIPQ
401: QQ
101: PEYNLKDCSL GSLLYGSVTE AFDLDYPMKN PVKSVWIVGS VNGLICVAIE ENDLFIWNPS IRKFKRLPDS RPTLRCGYYF MYGFGYDEVH DDYKVVGIFC
201: IFGAGGSYDV EVKIYGLKSD SWRNVDDFQG GVLLNDSGKF VKGKLHWATT ARLGEYNGWD IISIDLKDEK WGKIEQPCYE KGNFDFVLGV LEDNLSVLCN
301: YNKTRADVWV MKDYGVKDSW EKMYTISCPN DPGKYMFSPP LCMSKKGEIL LVFGSIFMIY NPSDDSIRYP EVTNFDACLE AEIYTESLIS PILQNEPIPQ
401: QQ
001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL
Arabidopsis Description
F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.