Factsheet for PGSC0003DMT400059330

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 1
mitochondrion 1
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

extracellular: 24773703
extracellular: 28961394

msms PMID: 28961394 doi

E Elagamey, A Sinha, K Narula, MAE Abdellatef, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, New Delhi, India., Plant Pathology Research Institute, Agricultural Research Center (ARC), Giza, Egypt.

msms PMID: 24773703 doi

T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson, E Alexandersson, E Andreasson

Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 102, SE-230 53 Alnarp, Sweden. erik.alexandersson@slu.se.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	82.8	84.14
Solyc05g007530.1.1	Tomato	cytosol	79.37	80.65
PGSC0003DMT400067303	Potato	extracellular	63.49	65.57
PGSC0003DMT400080293	Potato	nucleus	37.57	55.91
PGSC0003DMT400090382	Potato	cytosol	47.88	47.14
PGSC0003DMT400059327	Potato	cytosol	45.5	46.61
PGSC0003DMT400080292	Potato	cytosol	23.28	44.44
PGSC0003DMT400093810	Potato	plastid	31.48	42.5
PGSC0003DMT400088797	Potato	cytosol	25.13	38.62
PGSC0003DMT400076275	Potato	nucleus	41.01	38.56
PGSC0003DMT400059329	Potato	vacuole	40.74	38.4
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	27.78	38.04
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	32.8	37.8
PGSC0003DMT400080239	Potato	cytosol, plastid	31.22	36.99
PGSC0003DMT400080382	Potato	golgi	36.24	36.44
PGSC0003DMT400009785	Potato	cytosol	36.24	36.15
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	33.07	35.41
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	35.19	35.19
PGSC0003DMT400095263	Potato	cytosol	25.13	34.93
PGSC0003DMT400006240	Potato	mitochondrion	29.89	34.45
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	16.4	34.44
PGSC0003DMT400009709	Potato	cytosol	34.39	34.39
PGSC0003DMT400031977	Potato	cytosol	35.98	34.26
PGSC0003DMT400053926	Potato	cytosol	23.81	34.22
PGSC0003DMT400096925	Potato	cytosol	22.75	34.13
PGSC0003DMT400053922	Potato	extracellular, golgi	37.57	33.97
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	35.71	33.75
PGSC0003DMT400035091	Potato	mitochondrion	34.39	33.16
PGSC0003DMT400055337	Potato	plastid	35.45	33.0
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	32.01	32.7
PGSC0003DMT400016504	Potato	cytosol	33.07	32.38
PGSC0003DMT400059334	Potato	plastid	30.42	31.94
PGSC0003DMT400080369	Potato	nucleus	33.33	31.58
PGSC0003DMT400096151	Potato	cytosol	32.54	30.9
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	26.98	30.45
PGSC0003DMT400076284	Potato	cytosol	33.86	30.19
PGSC0003DMT400092235	Potato	cytosol	25.4	29.0
PGSC0003DMT400085500	Potato	cytosol	29.37	28.98
PGSC0003DMT400045556	Potato	cytosol	35.19	28.79
PGSC0003DMT400094202	Potato	cytosol	21.43	28.22
KRH11340	Soybean	cytosol, peroxisome, plastid	28.57	28.2
PGSC0003DMT400076216	Potato	cytosol	28.84	28.02
KRH11341	Soybean	cytosol, plastid	28.31	27.23
PGSC0003DMT400090333	Potato	cytosol	22.22	27.1
KRH20939	Soybean	cytosol, mitochondrion	28.84	26.85
PGSC0003DMT400015653	Potato	cytosol, plastid	34.39	26.42
PGSC0003DMT400076274	Potato	cytosol	26.98	26.36
KRH35044	Soybean	cytosol, extracellular, golgi	24.87	26.18
KRH72048	Soybean	cytosol	24.34	26.06
VIT_18s0041g01100.t01	Wine grape	cytosol	16.4	25.51
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	24.87	25.41
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	24.87	25.41
PGSC0003DMT400034123	Potato	golgi	24.6	25.34
PGSC0003DMT400097507	Potato	cytosol	15.61	24.79
PGSC0003DMT400076282	Potato	nucleus	10.32	24.68
PGSC0003DMT400025788	Potato	cytosol	25.13	24.23
KRH35047	Soybean	cytosol, peroxisome, plastid	24.6	23.66
VIT_18s0041g01090.t01	Wine grape	cytosol	24.6	23.43
Bra014991.1-P	Field mustard	cytosol	22.75	23.24
PGSC0003DMT400012000	Potato	plastid	22.49	22.97
PGSC0003DMT400058829	Potato	cytosol	21.96	22.8
AT3G23880.1	Thale cress	cytosol	21.96	22.8
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	11.11	22.22
PGSC0003DMT400046369	Potato	cytosol	23.55	22.03
PGSC0003DMT400016099	Potato	cytosol	19.84	20.38
PGSC0003DMT400016057	Potato	cytosol	20.11	20.38
PGSC0003DMT400016096	Potato	cytosol	11.11	20.29
PGSC0003DMT400030295	Potato	cytosol	8.73	16.67

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	UniProt:M1C446	PFAM:PF00646
PFAM:PF07734	EnsemblPlantsGene:PGSC0003DMG400023053	PGSC:PGSC0003DMG400023053	EnsemblPlants:PGSC0003DMT400059330	PFscan:PS50181	PANTHER:PTHR44355
PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002954759	SEG:seg

Description

F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023053]

Coordinates

chr5:-:5433324..5436663

Molecular Weight (calculated)

42816.3 Da

IEP (calculated)

5.709

GRAVY (calculated)

-0.105

Length

378 amino acids

Sequence
(BLAST)

001: MAESTISVLP HEIIIEILLE VPPKSLLKFM CVSQSWLELI SSMKFIKNHL KLTANDKEYS HHRIIFQEFA CNFKVCCLPS KLNKERSTEL FDIGSPMENP
101: TIYTWIAGSV NKLICLYSKI EETVLWNPVI NKSKKLPTFG AKLRNNCSYY LKYGFGYDET RDDYKVVFAE LRKPGQGFAW GQQWSPSAGP AQGVGSGRDI
201: YEDSGSYDTV VNIYSLRADS WRTINKFQGN FLLNSPGKFV DGNLYWALSA DVDAFNMCNI TSLDLADETW RRLELPDSYG KGSYPLALGV VGSHLSVLCI
301: NCLEGTNSDV WIRKDCGVEV SWIKIFTVDH PKDLGEFIFF TSIFSVPCYQ SNKDEILLLL PPIIMTYNGS TRQVEVVD

Best Arabidopsis Sequence Match ( AT3G23880.1 )
(BLAST)

001: MDETTREMFS PHNLPLEMME EILLRLPVKS LTRFKCVCSS WRSLISETLF ALKHALILET SKATTSTKSP YGVITTSRYH LKSCCIHSLY NASTVYVSEH
101: DGELLGRDYY QVVGTCHGLV CFHVDYDKSL YLWNPTIKLQ QRLSSSDLET SDDECVVTYG FGYDESEDDY KVVALLQQRH QVKIETKIYS TRQKLWRSNT
201: SFPSGVVVAD KSRSGIYING TLNWAATSSS SSWTIISYDM SRDEFKELPG PVCCGRGCFT MTLGDLRGCL SMVCYCKGAN ADVWVMKEFG EVYSWSKLLS
301: IPGLTDFVRP LWISDGLVVL LEFRSGLALY NCSNGRFHYP VSNSISGCRD AKVYLKTMVS PNDL

Arabidopsis Description

F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.