Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 68.87 | 79.57 |
| PGSC0003DMT400009709 | Potato | cytosol | 77.31 | 77.51 |
| Solyc09g072930.1.1 | Tomato | cytosol, plasma membrane | 70.98 | 69.69 |
| PGSC0003DMT400080382 | Potato | golgi | 58.05 | 58.51 |
| PGSC0003DMT400076275 | Potato | nucleus | 49.6 | 46.77 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 47.76 | 45.25 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 44.85 | 44.97 |
| PGSC0003DMT400080369 | Potato | nucleus | 47.23 | 44.86 |
| PGSC0003DMT400095263 | Potato | cytosol | 31.93 | 44.49 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 38.26 | 44.21 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 36.68 | 43.57 |
| PGSC0003DMT400055337 | Potato | plastid | 46.44 | 43.35 |
| PGSC0003DMT400016504 | Potato | cytosol | 43.8 | 43.01 |
| PGSC0003DMT400092235 | Potato | cytosol | 37.47 | 42.9 |
| PGSC0003DMT400031977 | Potato | cytosol | 44.33 | 42.32 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 43.54 | 42.09 |
| PGSC0003DMT400096151 | Potato | cytosol | 43.8 | 41.71 |
| PGSC0003DMT400090333 | Potato | cytosol | 34.04 | 41.61 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 38.52 | 41.36 |
| PGSC0003DMT400085500 | Potato | cytosol | 41.16 | 40.73 |
| PGSC0003DMT400076282 | Potato | nucleus | 16.89 | 40.51 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 39.05 | 39.78 |
| PGSC0003DMT400094202 | Potato | cytosol | 30.08 | 39.72 |
| PGSC0003DMT400076284 | Potato | cytosol | 43.8 | 39.15 |
| PGSC0003DMT400059327 | Potato | cytosol | 37.99 | 39.02 |
| PGSC0003DMT400067303 | Potato | extracellular | 37.47 | 38.8 |
| PGSC0003DMT400097507 | Potato | cytosol | 23.75 | 37.82 |
| PGSC0003DMT400096925 | Potato | cytosol | 24.8 | 37.3 |
| PGSC0003DMT400090382 | Potato | cytosol | 37.73 | 37.24 |
| PGSC0003DMT400059330 | Potato | extracellular | 36.15 | 36.24 |
| PGSC0003DMT400045556 | Potato | cytosol | 44.06 | 36.15 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 44.85 | 34.55 |
| PGSC0003DMT400093810 | Potato | plastid | 25.07 | 33.93 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 32.45 | 33.24 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 15.57 | 32.78 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 28.5 | 32.24 |
| PGSC0003DMT400059329 | Potato | vacuole | 33.77 | 31.92 |
| PGSC0003DMT400034123 | Potato | golgi | 30.87 | 31.88 |
| KRH11340 | Soybean | cytosol, peroxisome, plastid | 32.19 | 31.85 |
| PGSC0003DMT400080292 | Potato | cytosol | 16.62 | 31.82 |
| PGSC0003DMT400076216 | Potato | cytosol | 32.45 | 31.62 |
| KRH11341 | Soybean | cytosol, plastid | 32.72 | 31.55 |
| PGSC0003DMT400025788 | Potato | cytosol | 32.19 | 31.12 |
| PGSC0003DMT400076274 | Potato | cytosol | 31.4 | 30.75 |
| KRH20939 | Soybean | cytosol, mitochondrion | 32.72 | 30.54 |
| PGSC0003DMT400088797 | Potato | cytosol | 19.79 | 30.49 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 22.16 | 30.43 |
| KRH35044 | Soybean | cytosol, extracellular, golgi | 28.5 | 30.08 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 28.23 | 28.92 |
| PGSC0003DMT400053926 | Potato | cytosol | 20.05 | 28.9 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 27.97 | 28.65 |
| VIT_18s0041g01100.t01 | Wine grape | cytosol | 18.21 | 28.4 |
| Bra014991.1-P | Field mustard | cytosol | 27.44 | 28.11 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 30.61 | 27.75 |
| AT3G23880.1 | Thale cress | cytosol | 26.39 | 27.47 |
| PGSC0003DMT400012000 | Potato | plastid | 26.39 | 27.03 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 13.46 | 26.98 |
| KRH35047 | Soybean | cytosol, peroxisome, plastid | 27.44 | 26.46 |
| KRH72048 | Soybean | cytosol | 24.54 | 26.35 |
| PGSC0003DMT400059334 | Potato | plastid | 24.8 | 26.11 |
| PGSC0003DMT400058829 | Potato | cytosol | 25.07 | 26.1 |
| PGSC0003DMT400016096 | Potato | cytosol | 14.25 | 26.09 |
| VIT_18s0041g01090.t01 | Wine grape | cytosol | 27.18 | 25.94 |
| PGSC0003DMT400046369 | Potato | cytosol | 27.44 | 25.74 |
| PGSC0003DMT400030295 | Potato | cytosol | 13.19 | 25.25 |
| PGSC0003DMT400016057 | Potato | cytosol | 24.27 | 24.66 |
| PGSC0003DMT400080293 | Potato | nucleus | 16.36 | 24.41 |
| PGSC0003DMT400016099 | Potato | cytosol | 23.22 | 23.91 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:102600727 | MapMan:19.2.2.8.1.4.6 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | UniProt:M0ZWY0 |
| PFAM:PF00646 | PFAM:PF07734 | EnsemblPlantsGene:PGSC0003DMG400003831 | PGSC:PGSC0003DMG400003831 | EnsemblPlants:PGSC0003DMT400009785 | PFscan:PS50181 |
| PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI000295816A |
| RefSeq:XP_006358426.1 | SEG:seg | : | : | : | : |
Description
F-Box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003831]
Coordinates
chr9:-:50974797..50975936
Molecular Weight (calculated)
43423.6 Da
IEP (calculated)
7.290
GRAVY (calculated)
-0.091
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSILDLPT ELVIEILLRL PVKSLLKFRC ASKSWFALIS SPEFVKTHLS LNANNSEYTR HKVMMFERTV YGFRDCSVNS LFNNAFNEAN DLDYPRQFPC
101: GVYIVGSVNG LICFVSREKE LFLWNPSIRK YKKLPNPKTK TTFGYCIKQS YGFGYDEFHD DYNIVVIFAR YDFSLPIEVK RYSLKSDSWR TVDNCASMVP
201: LQQSGRFVDG KLHWNTIIGP KLCMKRSIIS IDLADGKWGE MELPCYWKGA RGVVLSLGVL GSNLSVLCDC DDPYMLDVWL MKEYGVKESW TKMFTIKMPD
301: DQLVYGYLGQ IRLHLASGSE ILVVFGSTFM IYNLKGDPLR SSKVINSNNW DEAEIYIESL VCPFSEVGTE DATKMGLRL
101: GVYIVGSVNG LICFVSREKE LFLWNPSIRK YKKLPNPKTK TTFGYCIKQS YGFGYDEFHD DYNIVVIFAR YDFSLPIEVK RYSLKSDSWR TVDNCASMVP
201: LQQSGRFVDG KLHWNTIIGP KLCMKRSIIS IDLADGKWGE MELPCYWKGA RGVVLSLGVL GSNLSVLCDC DDPYMLDVWL MKEYGVKESW TKMFTIKMPD
301: DQLVYGYLGQ IRLHLASGSE ILVVFGSTFM IYNLKGDPLR SSKVINSNNW DEAEIYIESL VCPFSEVGTE DATKMGLRL
001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
Arabidopsis Description
CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.