Factsheet for PGSC0003DMT400076282

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076284	Potato	cytosol	92.41	34.43
PGSC0003DMT400097507	Potato	cytosol	36.71	24.37
PGSC0003DMT400030295	Potato	cytosol	27.85	22.22
PGSC0003DMT400092235	Potato	cytosol	44.3	21.15
PGSC0003DMT400080382	Potato	golgi	44.3	18.62
PGSC0003DMT400006240	Potato	mitochondrion	38.61	18.6
PGSC0003DMT400090333	Potato	cytosol	36.08	18.39
VIT_18s0041g01100.t01	Wine grape	cytosol	27.85	18.11
PGSC0003DMT400055337	Potato	plastid	44.3	17.24
PGSC0003DMT400076275	Potato	nucleus	43.67	17.16
PGSC0003DMT400088797	Potato	cytosol	26.58	17.07
PGSC0003DMT400094202	Potato	cytosol	31.01	17.07
PGSC0003DMT400009785	Potato	cytosol	40.51	16.89
PGSC0003DMT400080369	Potato	nucleus	42.41	16.79
PGSC0003DMT400093810	Potato	plastid	29.75	16.79
PGSC0003DMT400080292	Potato	cytosol	20.89	16.67
PGSC0003DMT400009709	Potato	cytosol	39.87	16.67
PGSC0003DMT400016504	Potato	cytosol	40.51	16.58
PGSC0003DMT400035180	Potato	golgi, nucleus, plastid	39.24	16.4
PGSC0003DMT400031977	Potato	cytosol	41.14	16.37
PGSC0003DMT400094422	Potato	extracellular, golgi, plastid	36.08	16.15
PGSC0003DMT400035091	Potato	mitochondrion	39.87	16.07
PGSC0003DMT400096151	Potato	cytosol	39.24	15.58
PGSC0003DMT400085500	Potato	cytosol	36.71	15.14
PGSC0003DMT400015598	Potato	cytosol, nucleus, peroxisome, plastid	36.08	14.25
PGSC0003DMT400058350	Potato	cytosol, extracellular, plasma membrane, plastid	32.28	13.78
PGSC0003DMT400080293	Potato	nucleus	22.15	13.78
PGSC0003DMT400067303	Potato	extracellular	31.65	13.66
PGSC0003DMT400016096	Potato	cytosol	17.72	13.53
PGSC0003DMT400080239	Potato	cytosol, plastid	27.22	13.48
PGSC0003DMT400076274	Potato	cytosol	32.28	13.18
KRH11340	Soybean	cytosol, peroxisome, plastid	31.65	13.05
PGSC0003DMT400059337	Potato	cytosol, plasma membrane	30.38	12.9
PGSC0003DMT400045556	Potato	cytosol	37.34	12.77
KRH35044	Soybean	cytosol, extracellular, golgi	27.85	12.26
PGSC0003DMT400059327	Potato	cytosol	28.48	12.2
PGSC0003DMT400034123	Potato	golgi	27.85	11.99
PGSC0003DMT400009708	Potato	cytosol, peroxisome, plastid	24.68	11.89
KRH20939	Soybean	cytosol, mitochondrion	30.38	11.82
PGSC0003DMT400053926	Potato	cytosol	19.62	11.79
PGSC0003DMT400015653	Potato	cytosol, plastid	36.08	11.59
PGSC0003DMT400076216	Potato	cytosol	28.48	11.57
PGSC0003DMT400090382	Potato	cytosol	27.85	11.46
PGSC0003DMT400008824	Potato	extracellular, golgi, plastid	26.58	11.35
PGSC0003DMT400008825	Potato	extracellular, golgi, plastid	26.58	11.35
PGSC0003DMT400096882	Potato	cytosol, plasma membrane, plastid	19.62	11.23
KRH11341	Soybean	cytosol, plastid	26.58	10.69
PGSC0003DMT400059329	Potato	vacuole	26.58	10.47
PGSC0003DMT400059330	Potato	extracellular	24.68	10.32
PGSC0003DMT400025788	Potato	cytosol	25.32	10.2
PGSC0003DMT400055826	Potato	cytosol, extracellular, plasma membrane	21.52	10.15
PGSC0003DMT400053922	Potato	extracellular, golgi	26.58	10.05
VIT_18s0041g01090.t01	Wine grape	cytosol	24.68	9.82
PGSC0003DMT400058829	Potato	cytosol	22.15	9.62
PGSC0003DMT400012000	Potato	plastid	22.15	9.46
KRH35047	Soybean	cytosol, peroxisome, plastid	23.42	9.41
PGSC0003DMT400016057	Potato	cytosol	22.15	9.38
AT3G23880.1	Thale cress	cytosol	21.52	9.34
Bra014991.1-P	Field mustard	cytosol	21.52	9.19
PGSC0003DMT400046369	Potato	cytosol	23.42	9.16
PGSC0003DMT400016099	Potato	cytosol	20.89	8.97
PGSC0003DMT400096925	Potato	cytosol	12.66	7.94
PGSC0003DMT400095263	Potato	cytosol	12.66	7.35
KRH72048	Soybean	cytosol	15.82	7.08
PGSC0003DMT400031274	Potato	extracellular, plasma membrane	6.96	6.11
PGSC0003DMT400059334	Potato	plastid	10.13	4.44
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400076282	EnsemblPlantsGene:PGSC0003DMG400029656	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	PGSC:PGSC0003DMG400029656	UniParc:UPI000295DFA5
UniProt:M1CWH7	MapMan:35.2	:	:	:	:

Description

F-box domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029656]

Coordinates

chr9:-:58588995..58590423

Molecular Weight (calculated)

18395.3 Da

IEP (calculated)

4.621

GRAVY (calculated)

-0.747

Length

158 amino acids

Sequence
(BLAST)

001: MNDGWNIVSF DLADEKWGKA EKPTFEEGDI DSRLEVLGSN LSVFCYNKRR YVSVWVMNEY GVKESWKKMF TINYFDKPYV HEQPYFMSNK GEVLVGFSRS
101: FKIYNPKDNS FSPKIINYDR EAAEIYIESL VSPFPSEDQT SDATTKKSSD QDNQVTNN

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.