Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016096 | Potato | cytosol | 40.76 | 72.46 |
| PGSC0003DMT400016057 | Potato | cytosol | 71.47 | 70.51 |
| PGSC0003DMT400058829 | Potato | cytosol | 48.64 | 49.18 |
| PGSC0003DMT400012000 | Potato | plastid | 42.93 | 42.7 |
| AT3G06240.1 | Thale cress | cytosol | 30.16 | 26.0 |
| PGSC0003DMT400034123 | Potato | golgi | 25.82 | 25.89 |
| Bra001187.1-P | Field mustard | cytosol | 18.48 | 25.66 |
| PGSC0003DMT400055826 | Potato | cytosol, extracellular, plasma membrane | 23.1 | 25.37 |
| PGSC0003DMT400058350 | Potato | cytosol, extracellular, plasma membrane, plastid | 25.27 | 25.14 |
| PGSC0003DMT400008825 | Potato | extracellular, golgi, plastid | 25.27 | 25.14 |
| PGSC0003DMT400008824 | Potato | extracellular, golgi, plastid | 25.27 | 25.14 |
| CDY08063 | Canola | cytosol | 27.45 | 25.12 |
| PGSC0003DMT400009708 | Potato | cytosol, peroxisome, plastid | 22.28 | 25.0 |
| PGSC0003DMT400076274 | Potato | cytosol | 26.09 | 24.81 |
| PGSC0003DMT400080239 | Potato | cytosol, plastid | 21.47 | 24.76 |
| PGSC0003DMT400080382 | Potato | golgi | 25.27 | 24.73 |
| PGSC0003DMT400076216 | Potato | cytosol | 26.09 | 24.68 |
| PGSC0003DMT400096151 | Potato | cytosol | 26.63 | 24.62 |
| PGSC0003DMT400080369 | Potato | nucleus | 26.63 | 24.56 |
| PGSC0003DMT400031977 | Potato | cytosol | 26.36 | 24.43 |
| CDY58343 | Canola | cytosol | 26.63 | 24.26 |
| PGSC0003DMT400096925 | Potato | cytosol | 16.58 | 24.21 |
| PGSC0003DMT400092235 | Potato | cytosol | 21.74 | 24.17 |
| PGSC0003DMT400035180 | Potato | golgi, nucleus, plastid | 24.46 | 23.81 |
| PGSC0003DMT400009709 | Potato | cytosol | 24.18 | 23.55 |
| PGSC0003DMT400095263 | Potato | cytosol | 17.39 | 23.53 |
| PGSC0003DMT400085500 | Potato | cytosol | 24.46 | 23.5 |
| PGSC0003DMT400025788 | Potato | cytosol | 25.0 | 23.47 |
| PGSC0003DMT400016504 | Potato | cytosol | 24.46 | 23.32 |
| PGSC0003DMT400009785 | Potato | cytosol | 23.91 | 23.22 |
| PGSC0003DMT400090333 | Potato | cytosol | 19.29 | 22.9 |
| PGSC0003DMT400076275 | Potato | nucleus | 25.0 | 22.89 |
| PGSC0003DMT400076284 | Potato | cytosol | 26.36 | 22.88 |
| PGSC0003DMT400006240 | Potato | mitochondrion | 20.38 | 22.87 |
| PGSC0003DMT400059327 | Potato | cytosol | 22.83 | 22.76 |
| PGSC0003DMT400015598 | Potato | cytosol, nucleus, peroxisome, plastid | 24.73 | 22.75 |
| PGSC0003DMT400055337 | Potato | plastid | 25.0 | 22.66 |
| PGSC0003DMT400090382 | Potato | cytosol | 23.64 | 22.66 |
| PGSC0003DMT400046369 | Potato | cytosol | 24.73 | 22.52 |
| PGSC0003DMT400094422 | Potato | extracellular, golgi, plastid | 21.47 | 22.38 |
| PGSC0003DMT400094202 | Potato | cytosol | 17.39 | 22.3 |
| PGSC0003DMT400097507 | Potato | cytosol | 14.4 | 22.27 |
| PGSC0003DMT400035091 | Potato | mitochondrion | 23.64 | 22.19 |
| PGSC0003DMT400059337 | Potato | cytosol, plasma membrane | 22.01 | 21.77 |
| PGSC0003DMT400030295 | Potato | cytosol | 11.68 | 21.72 |
| PGSC0003DMT400096882 | Potato | cytosol, plasma membrane, plastid | 16.03 | 21.38 |
| PGSC0003DMT400067303 | Potato | extracellular | 21.2 | 21.31 |
| PGSC0003DMT400076282 | Potato | nucleus | 8.97 | 20.89 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 10.6 | 20.63 |
| PGSC0003DMT400059330 | Potato | extracellular | 20.38 | 19.84 |
| PGSC0003DMT400080292 | Potato | cytosol | 10.6 | 19.7 |
| PGSC0003DMT400015653 | Potato | cytosol, plastid | 25.82 | 19.31 |
| PGSC0003DMT400045556 | Potato | cytosol | 24.18 | 19.26 |
| PGSC0003DMT400059329 | Potato | vacuole | 20.11 | 18.45 |
| PGSC0003DMT400031274 | Potato | extracellular, plasma membrane | 8.42 | 17.22 |
| PGSC0003DMT400093810 | Potato | plastid | 12.77 | 16.79 |
| PGSC0003DMT400053926 | Potato | cytosol | 11.96 | 16.73 |
| PGSC0003DMT400088797 | Potato | cytosol | 11.14 | 16.67 |
| PGSC0003DMT400053922 | Potato | extracellular, golgi | 18.48 | 16.27 |
| PGSC0003DMT400059334 | Potato | plastid | 15.76 | 16.11 |
| PGSC0003DMT400080293 | Potato | nucleus | 9.24 | 13.39 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:102585639 | MapMan:19.2.2.8.1.4.6 | InterPro:F-box-assoc_dom_typ3 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | UniProt:M1A736 |
| PFAM:PF00646 | PFAM:PF08268 | EnsemblPlantsGene:PGSC0003DMG400006293 | PGSC:PGSC0003DMG400006293 | EnsemblPlants:PGSC0003DMT400016099 | PANTHER:PTHR44355 |
| SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0002951AEE | RefSeq:XP_006356982.1 | SEG:seg |
Description
F-box/kelch-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006293]
Coordinates
chr1:-:60422085..60423307
Molecular Weight (calculated)
42300.9 Da
IEP (calculated)
6.355
GRAVY (calculated)
-0.082
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSKTEFLP EELIVDILYR LPVKSIGRCR CVSKHWRNFL SHPQFIKLHF NLHVHTQEEK FIIITRQHEL HTITFNHHIP QNGEIGGISR KVNFQQLSHN
101: WISVAGSCNG LVLVVDRENL KFLINPTTLK HHQIPSFDLV LPLQGSCYMY GLGYNVVSDD YKVVALSYCC YNQFRIATCV DIYYVRKGLW EKLENSPYDH
201: SHTDSVSGVL VNGALHWLTH RIPEYSSAIV AFDLSVDKFS EVPGPTDLQD YCFMCKLAAL KGYLCISTNL SPSMDKIIFW IMKEYGVKES WTKFEIKDPN
301: LNVCLGKLLC SIGDDDDVLL DVNEELVVYN MTENWCKDLL LDVNHISYEG RTFVDSLVSP YFGRETEG
101: WISVAGSCNG LVLVVDRENL KFLINPTTLK HHQIPSFDLV LPLQGSCYMY GLGYNVVSDD YKVVALSYCC YNQFRIATCV DIYYVRKGLW EKLENSPYDH
201: SHTDSVSGVL VNGALHWLTH RIPEYSSAIV AFDLSVDKFS EVPGPTDLQD YCFMCKLAAL KGYLCISTNL SPSMDKIIFW IMKEYGVKES WTKFEIKDPN
301: LNVCLGKLLC SIGDDDDVLL DVNEELVVYN MTENWCKDLL LDVNHISYEG RTFVDSLVSP YFGRETEG
001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES
Arabidopsis Description
F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.