Factsheet for AT3G06240.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001187.1-P	Field mustard	cytosol	44.03	70.94
CDY08063	Canola	cytosol	65.34	69.4
CDY58343	Canola	cytosol	65.57	69.31
PGSC0003DMT400012000	Potato	plastid	26.7	30.81
PGSC0003DMT400058829	Potato	cytosol	26.0	30.49
Solyc12g099550.1.1	Tomato	cytosol	23.89	30.27
PGSC0003DMT400016099	Potato	cytosol	26.0	30.16
PGSC0003DMT400016057	Potato	cytosol	25.76	29.49
PGSC0003DMT400016096	Potato	cytosol	13.82	28.5
AT4G12560.2	Thale cress	cytosol	24.59	25.42
AT3G23880.1	Thale cress	cytosol	21.55	25.27
AT4G22390.1	Thale cress	cytosol	20.14	21.39

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	EntrezGene:819798	UniProt:A0A178VH03	ProteinID:AAF30317.1	ProteinID:AEE74364.1
EMBL:AK118303	ArrayExpress:AT3G06240	EnsemblPlantsGene:AT3G06240	RefSeq:AT3G06240	TAIR:AT3G06240	RefSeq:AT3G06240-TAIR-G
EnsemblPlants:AT3G06240.1	TAIR:AT3G06240.1	EMBL:AY084423	Unigene:At.19409	EMBL:BT006048	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	RefSeq:NP_566277.2	ProteinID:OAP04821.1	PFAM:PF00646
PFAM:PF07734	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293
PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR44355
PANTHER:PTHR44355:SF1	UniProt:Q8GXC7	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI00000ADEFC	SEG:seg	:	:	:	:

Description

F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]

Coordinates

chr3:+:1887043..1888807

Molecular Weight (calculated)

48628.3 Da

IEP (calculated)

4.981

GRAVY (calculated)

-0.358

Length

427 amino acids

Sequence
(BLAST)

001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.