CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001187.1-P	Field mustard	cytosol	64.85	98.87
CDY08063	Canola	cytosol	91.83	92.29
AT3G06240.1	Thale cress	cytosol	69.31	65.57
PGSC0003DMT400058829	Potato	cytosol	26.73	29.67
PGSC0003DMT400012000	Potato	plastid	26.73	29.19
Solyc12g099550.1.1	Tomato	cytosol	23.76	28.49
PGSC0003DMT400016057	Potato	cytosol	25.5	27.61
PGSC0003DMT400016099	Potato	cytosol	24.26	26.63
PGSC0003DMT400016096	Potato	cytosol	13.37	26.09
CDX76370	Canola	cytosol	24.26	24.08
CDX78638	Canola	cytosol	22.77	23.53
CDX78639	Canola	cytosol	22.28	23.08
CDY67179	Canola	cytosol	24.26	22.9
CDX77477	Canola	cytosol	20.79	22.7
CDX97333	Canola	cytosol	18.81	22.69
CDX78640	Canola	cytosol	21.78	22.68
CDX78642	Canola	cytosol	21.78	22.06
CDX78641	Canola	cytosol	21.78	22.0
CDX70626	Canola	cytosol	22.03	20.6
CDX78643	Canola	cytosol	21.78	20.28
CDY27453	Canola	cytosol, mitochondrion	3.71	15.62
CDX85142	Canola	cytosol	21.29	10.47
CDX78644	Canola	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	UniProt:A0A078J633	EnsemblPlants:CDY58343	ProteinID:CDY58343	ProteinID:CDY58343.1
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00023478001	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PFAM:PF00646	PFAM:PF07734
PFscan:PS50181	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI0004EE1546	SEG:seg	:	:	:

Description

BnaA03g57440DBnaA03g57440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J633]

Coordinates

chrLK033659:+:48396..49749

Molecular Weight (calculated)

46173.1 Da

IEP (calculated)

5.825

GRAVY (calculated)

-0.284

Length

404 amino acids

Sequence
(BLAST)

001: MYKKLIHFLG DALTETTKKN ERRRREETTE KASLELPPEI IREILLRLPA KSIGRFRCVS KLFRSLSSDP KFANNHLDLT IRNDAVHRKL IVSSHNLYAL
101: DLDSIGCQRF RDLLAQELNY PLKEDPIKFD EMIKCHVGEN MLKPYRRNWV EIIGSSHGLV CISPCEGALF LYNPTTGESK RLLISAGGEE FQTIGFGFDD
201: LTDDYKVVKL VADGDNVLKS SVYSLKSDSW RWIRDLSYEH KDCFSSGVTL RGAVHWVFAN DSQRVVLAFD FKTEEFREML LPGEEAEDCG HSYRNFVVGV
301: INGRLCLVNS CYEVHDDVWV MDEYGVASSW RRIRISLLYR SMKPLCSSEN GEEVLLELDG DMVLYNFESH GSRYLGIRGV KLSDGFEADA YVESLISPNS
401: YGVL

Best Arabidopsis Sequence Match ( AT3G06240.1 )
(BLAST)

001: MKAIQLLWEA IMEATKRERR REDDDGEKAS PESLVLPPEI ITEILLRLPA KSIGRFRCVS KLFCTLSSDP GFAKIHLDLI LRNESVRSLH RKLIVSSHNL
101: YSLDFNSIGD GIRDLAAVEH NYPLKDDPSI FSEMIRNYVG DHLYDDRRVM LKLNAKSYRR NWVEIVGSSN GLVCISPGEG AVFLYNPTTG DSKRLPENFR
201: PKSVEYERDN FQTYGFGFDG LTDDYKLVKL VATSEDILDA SVYSLKADSW RRICNLNYEH NDGSYTSGVH FNGAIHWVFT ESRHNQRVVV AFDIQTEEFR
301: EMPVPDEAED CSHRFSNFVV GSLNGRLCVV NSCYDVHDDI WVMSEYGEAK SWSRIRINLL YRSMKPLCST KNDEEVLLEL DGDLVLYNFE TNASSNLGIC
401: GVKLSDGFEA NTYVESLISP NSYGIES

Arabidopsis Description

F-box/kelch-repeat protein At3g06240 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.