CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70626	Canola	cytosol	94.49	87.27
CDX78639	Canola	cytosol	82.71	84.62
CDX78641	Canola	cytosol	75.69	75.5
CDX78640	Canola	cytosol	72.93	75.0
CDX78643	Canola	cytosol	81.45	74.88
CDX78638	Canola	cytosol	72.18	73.66
AT4G22390.1	Thale cress	cytosol	66.92	66.42
CDX76370	Canola	cytosol	65.41	64.13
CDY27453	Canola	cytosol, mitochondrion	13.53	56.25
CDX97333	Canola	cytosol	46.12	54.93
CDY67179	Canola	cytosol	58.9	54.91
KRH36548	Soybean	cytosol, plastid	30.08	30.61
KRH11533	Soybean	cytosol	29.32	29.7
Solyc01g008660.2.1	Tomato	cytosol	24.56	28.49
KRH01989	Soybean	cytosol	26.57	27.04
KRH51164	Soybean	cytosol	26.07	27.01
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	10.78	22.75
CDY58343	Canola	cytosol	22.06	21.78
CDY08063	Canola	cytosol	21.3	21.14
CDX77477	Canola	cytosol	18.05	19.46
CDX85142	Canola	cytosol	18.05	8.77
CDX78644	Canola	plasma membrane	1.75	1.62

Protein Annotations

EnsemblPlants:CDX78642	EnsemblPlantsGene:GSBRNA2T00130060001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PFAM:PF00646	PFscan:PS50181
ProteinID:CDX78642	ProteinID:CDX78642.1	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0004EDCA31	MapMan:35.1	:	:	:	:

Description

BnaA03g05540D

Coordinates

chrLK031815:+:1626795..1628257

Molecular Weight (calculated)

45329.0 Da

IEP (calculated)

6.353

GRAVY (calculated)

-0.050

Length

399 amino acids

Sequence
(BLAST)

001: MANMPMDIVN DVFLRLPAST LVRCRLLSKP CFSLIDSPDF AASHLKRTLE TEEHLMILLL SHRLLRTMYL DAPDKLSDVE HPLQIGGLTE VFGSVNGVIG
101: LTNSPVDLAI FNPSTRKIHR LPIEPIDFSE QFITRENVFY GLGYDSVSDD YKVVRMIQSK YKGDGVEESF GYALEIKVFS LKSNQWKRVH LLFEVQILFI
201: YFYYDLLHRR GNGVLASNSL HWILPRTGGH TAFNTIIRFD LASDNLGVLS FPQDLYLEDD MDIGVLDGCL CLMCYSESSH VGVWILREYE GEWSKFITVP
301: KPETVVSFEF VRPMIYSKDR SKILLEINNG KLMWFDLESK GFETLGIKGC ESPCNAEIVV SSLVLGCNGD PSRAQEKKMM QKGNKRGDGF LSKGFKLKF

Best Arabidopsis Sequence Match ( AT4G22390.1 )
(BLAST)

001: MAECPTDLIN EMFLRLRATT LVKCRVLSKP CFSLIDSPEF VSSHLRRRLE TGEHLMILLR GPRLLRTVEL DSPENVSDIP HPLQAGGFTE VFGSFNGVIG
101: LCNSPVDLAI FNPSTRKIHR LPIEPIDFPE RDITREYVFY GLGYDSVGDD FKVVRIVQCK LKEGKKKFPC PVEVKVFSLK KNSWKRVCLM FEFQILWISY
201: YYHLLPRRGY GVVVNNHLHW ILPRRQGVIA FNAIIKYDLA SDDIGVLSFP QELYIEDNMD IGVLDGCVCL MCYDEYSHVD VWVLKEYEDY KSWTKLYRVP
301: KPESVESVEF IRPLICSKDR SKILLEINNA ANLMWFDLES QSLTTAGIEC DSSFTADILV SSLVLGCKGD PTQAQRSKDQ KMMPKSTKRW DGFLSKGFKL
401: KL

Arabidopsis Description

F-box protein At4g22390 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.