CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78642	Canola	cytosol	74.88	81.45
CDX78639	Canola	cytosol	69.35	77.18
CDX70626	Canola	cytosol	76.27	76.62
CDX78640	Canola	cytosol	68.2	76.29
CDX78641	Canola	cytosol	70.05	76.0
CDX78638	Canola	cytosol	64.98	72.12
AT4G22390.1	Thale cress	cytosol	58.76	63.43
CDX76370	Canola	cytosol	56.68	60.44
CDY67179	Canola	cytosol	52.77	53.5
CDX97333	Canola	cytosol	41.01	53.13
CDY27453	Canola	cytosol, mitochondrion	10.6	47.92
Bra006313.1-P	Field mustard	plasma membrane	91.94	47.0
Solyc01g008660.2.1	Tomato	cytosol	23.27	29.36
KRH36548	Soybean	cytosol, plastid	26.04	28.83
KRH11533	Soybean	cytosol	25.81	28.43
KRH01989	Soybean	cytosol	24.19	26.79
KRH51164	Soybean	cytosol	23.27	26.23
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	9.91	22.75
CDY58343	Canola	cytosol	20.28	21.78
CDY08063	Canola	cytosol	20.05	21.64
CDX77477	Canola	cytosol	17.05	20.0
CDX85142	Canola	cytosol	17.51	9.26
CDX78644	Canola	plasma membrane	3.46	3.46

Protein Annotations

EnsemblPlants:CDX78643	EnsemblPlantsGene:GSBRNA2T00130061001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PFAM:PF00646	PFscan:PS50181
ProteinID:CDX78643	ProteinID:CDX78643.1	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EDB66A
MapMan:35.1	:	:	:	:	:

Description

BnaA03g05550D

Coordinates

chrLK031815:+:1628796..1630598

Molecular Weight (calculated)

49668.7 Da

IEP (calculated)

9.181

GRAVY (calculated)

-0.065

Length

434 amino acids

Sequence
(BLAST)

001: MANMPMDIVN DVFLRLPATT LVRCRLLSKP CFSLIDSPDF IASHLKRVLE TEEHLMIILR SPRLLRTVYL DAPDKISDVD HPLQAGGFTE VFGSVNGVIG
101: LTNSPVDLAI FNPSTRKIHR LPIEPIDFSE RFIARENVFY GLGYDSVSDD YKVVRMVQST HKGHGVKESC RAFEVKVFSL KSNKWKRIHL LFDVQILFTK
201: LYYRLLYRRG NGVLASNRLH WILPRSRGYI AWNTVIRFDL ASDDLGILRY PLELLHEDGM GIGVLDGCLC LMCYSESSHV GVWILREYRG KWSKFISVPK
301: PETVVSFEFV RPMIYSKDRS RILLEINNGK LFWFDLESKS FETLEIKGCE GLPCNAEIVV SSLVLGCKGD PRRAQEKKMG NKRWGRWFSV QGIQAEVMSK
401: AGELQSPKLY KRRCASVTSF ECGMLQYNAL VLHI

Best Arabidopsis Sequence Match ( AT4G22390.1 )
(BLAST)

001: MAECPTDLIN EMFLRLRATT LVKCRVLSKP CFSLIDSPEF VSSHLRRRLE TGEHLMILLR GPRLLRTVEL DSPENVSDIP HPLQAGGFTE VFGSFNGVIG
101: LCNSPVDLAI FNPSTRKIHR LPIEPIDFPE RDITREYVFY GLGYDSVGDD FKVVRIVQCK LKEGKKKFPC PVEVKVFSLK KNSWKRVCLM FEFQILWISY
201: YYHLLPRRGY GVVVNNHLHW ILPRRQGVIA FNAIIKYDLA SDDIGVLSFP QELYIEDNMD IGVLDGCVCL MCYDEYSHVD VWVLKEYEDY KSWTKLYRVP
301: KPESVESVEF IRPLICSKDR SKILLEINNA ANLMWFDLES QSLTTAGIEC DSSFTADILV SSLVLGCKGD PTQAQRSKDQ KMMPKSTKRW DGFLSKGFKL
401: KL

Arabidopsis Description

F-box protein At4g22390 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.