Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400046369 | Potato | cytosol | 90.7 | 77.23 |
| KRH36548 | Soybean | cytosol, plastid | 33.72 | 29.59 |
| KRH11533 | Soybean | cytosol | 33.72 | 29.44 |
| CDX97333 | Canola | cytosol | 27.91 | 28.66 |
| AT4G12560.2 | Thale cress | cytosol | 34.01 | 28.33 |
| KRH01989 | Soybean | cytosol | 32.27 | 28.32 |
| KRH51164 | Soybean | cytosol | 31.69 | 28.31 |
| Bra018485.1-P | Field mustard | cytosol | 33.72 | 28.22 |
| Solyc12g099550.1.1 | Tomato | cytosol | 27.62 | 28.19 |
| Bra020847.1-P | Field mustard | cytosol | 32.56 | 27.72 |
| CDX76370 | Canola | cytosol | 32.56 | 27.52 |
| Solyc01g067030.2.1 | Tomato | extracellular | 28.49 | 26.56 |
| Bra006310.1-P | Field mustard | cytosol | 28.49 | 26.56 |
| Solyc10g068340.1.1 | Tomato | cytosol | 20.06 | 26.54 |
| Solyc02g033040.2.1 | Tomato | nucleus | 26.16 | 26.47 |
| CDY67179 | Canola | cytosol | 32.85 | 26.4 |
| CDX78640 | Canola | cytosol | 28.78 | 25.52 |
| CDX78638 | Canola | cytosol | 28.78 | 25.32 |
| Solyc09g091690.1.1 | Tomato | cytosol | 28.49 | 25.26 |
| Bra006309.1-P | Field mustard | cytosol | 29.07 | 25.25 |
| Solyc09g083230.1.1 | Tomato | cytosol, peroxisome, plastid | 27.62 | 24.93 |
| CDX78641 | Canola | cytosol | 28.78 | 24.75 |
| Solyc09g091710.1.1 | Tomato | nucleus | 28.78 | 24.63 |
| CDX78639 | Canola | cytosol | 27.91 | 24.62 |
| Solyc09g072930.1.1 | Tomato | cytosol, plasma membrane | 27.62 | 24.61 |
| CDX78642 | Canola | cytosol | 28.49 | 24.56 |
| Bra006311.1-P | Field mustard | cytosol | 27.91 | 24.49 |
| Solyc10g075010.1.1 | Tomato | extracellular | 25.0 | 24.23 |
| Bra006312.1-P | Field mustard | cytosol | 27.91 | 24.0 |
| Solyc10g052710.1.1 | Tomato | cytosol | 26.16 | 23.56 |
| CDX78643 | Canola | cytosol | 29.36 | 23.27 |
| AT4G22390.1 | Thale cress | cytosol | 27.03 | 23.13 |
| Solyc05g007530.1.1 | Tomato | cytosol | 25.0 | 23.12 |
| Solyc10g008450.1.1 | Tomato | extracellular, vacuole | 23.26 | 22.92 |
| Solyc09g091220.1.1 | Tomato | cytosol | 26.16 | 22.61 |
| Solyc05g007400.1.1 | Tomato | cytosol | 24.71 | 22.37 |
| CDX70626 | Canola | cytosol | 27.91 | 22.22 |
| Solyc05g005110.1.1 | Tomato | mitochondrion, plastid | 25.58 | 21.73 |
| Solyc01g067010.2.1 | Tomato | cytosol, extracellular, plasma membrane | 22.97 | 21.29 |
| Solyc09g072910.1.1 | Tomato | plasma membrane | 26.16 | 20.59 |
| Solyc05g007360.1.1 | Tomato | extracellular | 23.26 | 19.95 |
| Solyc05g007370.1.1 | Tomato | golgi, mitochondrion, plasma membrane | 21.8 | 19.28 |
| Solyc05g007380.1.1 | Tomato | endoplasmic reticulum, golgi | 21.8 | 18.56 |
| Solyc07g052580.1.1 | Tomato | cytosol, peroxisome, plastid | 22.67 | 18.01 |
| Bra006313.1-P | Field mustard | plasma membrane | 29.65 | 12.01 |
| CDX78644 | Canola | plasma membrane | 0.87 | 0.69 |
Protein Annotations
| EnsemblPlants:Solyc01g008660.2.1 | EnsemblPlantsGene:Solyc01g008660.2 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31790 | PANTHER:PTHR31790:SF34 |
| PFAM:PF00646 | PFscan:PS50181 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI000276312E |
| UniProt:K4AT63 | MapMan:19.2.2.8.1.4.6 | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:2721644..2722893
Molecular Weight (calculated)
38882.1 Da
IEP (calculated)
8.215
GRAVY (calculated)
-0.283
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDIPPEILS DILSRLPVKS LLRFRCVSKS IKTLIDSPEF IEAHLKNQVL KPNSDMKLIL KAHIDADNLF SLDFASMAST QIPRELAHPL KHLYGPTQVL
101: GSCRGLVLIS NNMNDNGVWN PSTKVFRKLP FCHINPPRKP LGGQGPGLSQ IRGGFGYDRL ADDYKVVTIA QLYHPDAEPS LVSETMVFSL KLDVWKKVQD
201: CPYWLLKEDN GTCAGGALHW IVTKEPSAWW SPLILVGLNL QNGTFQEVEY PEDLGNPQQI NLAVLGECLC LLKGHLTCSN AKNHVLDRID VWMMKDYGVK
301: ESWVKLFSVE QLEGRQHFRN LRPITYSVTG RNEKDRKKGI EQRE
101: GSCRGLVLIS NNMNDNGVWN PSTKVFRKLP FCHINPPRKP LGGQGPGLSQ IRGGFGYDRL ADDYKVVTIA QLYHPDAEPS LVSETMVFSL KLDVWKKVQD
201: CPYWLLKEDN GTCAGGALHW IVTKEPSAWW SPLILVGLNL QNGTFQEVEY PEDLGNPQQI NLAVLGECLC LLKGHLTCSN AKNHVLDRID VWMMKDYGVK
301: ESWVKLFSVE QLEGRQHFRN LRPITYSVTG RNEKDRKKGI EQRE
001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
Arabidopsis Description
CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.