CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97333	Canola	cytosol	71.73	91.64
AT4G12560.2	Thale cress	cytosol	81.54	84.5
CDX76370	Canola	cytosol	68.46	71.99
CDY27453	Canola	cytosol, mitochondrion	13.79	61.46
CDX78640	Canola	cytosol	54.44	60.05
CDX78638	Canola	cytosol	54.67	59.85
CDX78642	Canola	cytosol	54.91	58.9
CDX78639	Canola	cytosol	52.57	57.69
CDX78641	Canola	cytosol	53.04	56.75
CDX70626	Canola	cytosol	54.91	54.4
CDX78643	Canola	cytosol	53.5	52.77
KRH36548	Soybean	cytosol, plastid	31.54	34.44
Solyc01g008660.2.1	Tomato	cytosol	26.4	32.85
KRH11533	Soybean	cytosol	30.14	32.74
KRH51164	Soybean	cytosol	27.8	30.91
KRH01989	Soybean	cytosol	27.1	29.59
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	10.98	24.87
CDY58343	Canola	cytosol	22.9	24.26
CDY08063	Canola	cytosol	22.66	24.13
CDX77477	Canola	cytosol	18.93	21.89
CDX85142	Canola	cytosol	19.39	10.11
CDX78644	Canola	plasma membrane	0.93	0.92

Protein Annotations

EnsemblPlants:CDY67179	EnsemblPlantsGene:GSBRNA2T00059705001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1
PFAM:PF07734	PFscan:PS50181	ProteinID:CDY67179	ProteinID:CDY67179.1	SEG:seg	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI0004EE6D1E	UniProt:A0A078JK59	MapMan:19.2.2.8.1.4.6	:	:

Description

BnaCnng53870DBnaCnng53870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JK59]

Coordinates

chrLK035837:-:3434..5200

Molecular Weight (calculated)

49502.0 Da

IEP (calculated)

8.877

GRAVY (calculated)

-0.297

Length

428 amino acids

Sequence
(BLAST)

001: MTTVPMDIVN DLFLRLPAKS LVRFRALSKP CYHLINSPDF ISSHLSRVLQ TNDHLMILLR GALHLYTVDL DSLDTVSDVE HPMKRGGPTE VFGSCNGLIG
101: LSNSPTDLAI FNPSTRQIHR LPPSPVDLPE GSSTRGYVFY GLGYDSVNDD YKVVRMVQFK RDPDDELGCS FPYEVKVFSF KMNSWKRIES VLPPIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNIIVRFDL ALEVFDIVRF PEPIANGDVD IQMDIGVLDG CLCLMCNYDQ RYVDVWMMKE YNVRGSWCKV
301: FTVQKPKSVK MFAFMRPLVY SKDRDKVLLE INNTKLVWFD LETRKLSTLK IKDCPSSYSA ELVVSSLVLG CKGDLDNIKH RKEQRDKEAR ESKMLQNRMI
401: SCQRDSNWSY KQKQENSQRR AGRNRKEE

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.