CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006312.1-P	Field mustard	cytosol	97.5	97.5
CDX78640	Canola	cytosol	73.5	75.77
CDX78642	Canola	cytosol	75.5	75.69
CDX78639	Canola	cytosol	72.25	74.1
CDX78638	Canola	cytosol	69.75	71.36
CDX70626	Canola	cytosol	76.0	70.37
CDX78643	Canola	cytosol	76.0	70.05
AT4G22390.1	Thale cress	cytosol	61.25	60.95
CDX76370	Canola	cytosol	61.25	60.2
CDY67179	Canola	cytosol	56.75	53.04
CDX97333	Canola	cytosol	44.25	52.84
CDY27453	Canola	cytosol, mitochondrion	11.75	48.96
KRH36548	Soybean	cytosol, plastid	28.75	29.34
Solyc01g008660.2.1	Tomato	cytosol	24.75	28.78
KRH11533	Soybean	cytosol	27.75	28.17
KRH51164	Soybean	cytosol	26.25	27.27
KRH01989	Soybean	cytosol	25.5	26.02
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	10.5	22.22
CDY08063	Canola	cytosol	22.0	21.89
CDY58343	Canola	cytosol	22.0	21.78
CDX77477	Canola	cytosol	17.75	19.19
CDX85142	Canola	cytosol	17.75	8.65
CDX78644	Canola	plasma membrane	2.25	2.08

Protein Annotations

EnsemblPlants:CDX78641	EnsemblPlantsGene:GSBRNA2T00130059001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:Gal_Oxase/kelch_b-propeller	PANTHER:PTHR44355	ProteinID:CDX78641	ProteinID:CDX78641.1	SEG:seg
SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EEFA82	MapMan:35.1	:

Description

BnaA03g05530D

Coordinates

chrLK031815:+:1624442..1625847

Molecular Weight (calculated)

45971.9 Da

IEP (calculated)

7.234

GRAVY (calculated)

-0.046

Length

400 amino acids

Sequence
(BLAST)

001: MANMPMDIVT DVFLRLPASM LVRCRVLSKP CFSLIDSPDF VASHLKRTLE TEEHLMILLQ SDRLLRMVYL DAPDKLSDVE NPLPTGGFTE VFGSVNGLIG
101: LTNSPVDLSI FNPSTRKIHR LPFEPIDFPQ HSITRQYVFY GLGHDSVSDD YKVVRMVQCK HKDGDGGYPF EIKVFSLKSN KWKRIHLRFE VQNLLVRFYY
201: NLTYRSGNGV LASNSFHWIL PRSEGYIEFN TVIRFDLASG DLGVLSFPEE LYHEDYMDIG VLDGCLCLMC YGDFSHVDVW ILREYGGKWS KFITVPTSET
301: VVSLEFVRPL VYSKDRSKIL LEINNGKLFW FDLGSKSFEM LVIKGYDEDR PWNVEIVVSS LVLGCKGDPR RAREKKMMQK VNKRCYCSSL YCALLLVLIP

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.