Factsheet for Bra006312.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78641	Canola	cytosol	97.5	97.5
Bra006310.1-P	Field mustard	cytosol	69.0	74.8
Bra006311.1-P	Field mustard	cytosol	72.5	73.98
Bra006309.1-P	Field mustard	cytosol	68.25	68.94
AT4G22390.1	Thale cress	cytosol	60.75	60.45
Bra020847.1-P	Field mustard	cytosol	60.75	60.15
Bra018485.1-P	Field mustard	cytosol	57.0	55.47
Bra006313.1-P	Field mustard	plasma membrane	76.25	35.92
KRH36548	Soybean	cytosol, plastid	28.25	28.83
KRH11533	Soybean	cytosol	28.0	28.43
Solyc01g008660.2.1	Tomato	cytosol	24.0	27.91
KRH51164	Soybean	cytosol	25.75	26.75
KRH01989	Soybean	cytosol	25.0	25.51
Bra001187.1-P	Field mustard	cytosol	16.0	24.15
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	10.5	22.22
Bra014991.1-P	Field mustard	cytosol	18.0	19.46

Protein Annotations

EnsemblPlants:Bra006312.1	EnsemblPlants:Bra006312.1-P	EnsemblPlantsGene:Bra006312	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:Gal_Oxase/kelch_b-propeller	PANTHER:PTHR44355	SEG:seg	SUPFAM:SSF50965
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI000253FC25	UniProt:M4CQ23	MapMan:35.1	:

Description

AT4G22390 (E=2e-140) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G12560.2); Has 662 Blast hits to 662 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 662; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA03:+:2954745..2955947

Molecular Weight (calculated)

45915.8 Da

IEP (calculated)

7.452

GRAVY (calculated)

-0.045

Length

400 amino acids

Sequence
(BLAST)

001: MANMPMDIVT DVFVRLPASM LVRCRVLSKP CFSLIDSPDL VASHLKRTLE TEEHLMILLQ SDRLLRTVYL DAPDKLSDVE NPLPTGGFTE VFGSVNGLIG
101: LTNSPVDLSI FNPSTRKIHR LPFEPIDFPQ HSITRQYVFY GLGHDSVSDD YKVVRMVQCK HKDGAGGYPY EIKVFSLKSN KWKRIHLRFE VQNLLVRFYY
201: NLTYRSGNGV LASNSFHWIL PRSEGYIEFN TVIRFDLSSD DLGVLSFPEE LYHEDYMDIG VLDGCLCLMC YCDFSHVDVW ILSEYGGKWS KFITVPTSKT
301: VVSLEFVRPL VYSKDRSKIL LEINNGKLFW FDLGSKSFEM LVIKGYDEDR PWNVEIVVSS LVLGCKGDPR RAREKKMMQK VNKRCYCSSL YCALLLVLIP

Best Arabidopsis Sequence Match ( AT4G22390.2 )
(BLAST)

001: MAECPTDLIN EMFLRLRATT LVKCRVLSKP CFSLIDSPEF VSSHLRRRLE TGEHLMILLR GPRLLRTVEL DSPENVSDIP HPLQAGGFTE VFGSFNGVIG
101: LCNSPVDLAI FNPSTRKIHR LPIEPIDFPE RDITREYVFY GLGYDSVGDD FKVVRIVQCK LKEGKKKFPC PVEVKVFSLK KNSWKRVCLM FEFQILWISY
201: YYHLLPRRGY GVVVNNHLHW ILPRRQGVIA FNAIIKYDLA SDDIGVLSFP QELYIEDNMD IGVLDGCVCL MCYDEYSHVD VWVLKEYEDY KSWTKLYRVP
301: KPESVESVEF IRPLICSKDR SKILLEINNA ANLMWFDLES QSLTTAGIEC DSSFTADILV SSLVLGCKGD PTQAQRSKDQ KMMPKSTKRD GFLSKGFKLK
401: L

Arabidopsis Description

F-box protein At4g22390 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.