Factsheet for Bra006309.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78638	Canola	cytosol	95.45	96.68
Bra006310.1-P	Field mustard	cytosol	67.17	72.09
Bra006312.1-P	Field mustard	cytosol	68.94	68.25
Bra006311.1-P	Field mustard	cytosol	67.42	68.11
Bra020847.1-P	Field mustard	cytosol	61.36	60.15
AT4G22390.1	Thale cress	cytosol	58.84	57.96
Bra018485.1-P	Field mustard	cytosol	59.09	56.93
Bra006313.1-P	Field mustard	plasma membrane	71.21	33.22
KRH36548	Soybean	cytosol, plastid	30.3	30.61
KRH11533	Soybean	cytosol	29.29	29.44
KRH51164	Soybean	cytosol	28.28	29.09
KRH01989	Soybean	cytosol	28.79	29.08
Solyc01g008660.2.1	Tomato	cytosol	25.25	29.07
Bra001187.1-P	Field mustard	cytosol	16.67	24.91
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	10.86	22.75
Bra014991.1-P	Field mustard	cytosol	19.7	21.08

Protein Annotations

EnsemblPlants:Bra006309.1	EnsemblPlants:Bra006309.1-P	EnsemblPlantsGene:Bra006309	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1
PFAM:PF00646	SEG:seg	SMART:SM00256	SUPFAM:SSF69304	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI000253FC22	UniProt:M4CQ20	MapMan:35.1	:	:	:

Description

AT4G22390 (E=3e-121) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G12560.2); Has 662 Blast hits to 662 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 662; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA03:+:2947601..2948791

Molecular Weight (calculated)

45522.6 Da

IEP (calculated)

7.744

GRAVY (calculated)

0.017

Length

396 amino acids

Sequence
(BLAST)

001: MANLPMDTVA DIFLRLPAAT LVRCRVLSKP CCSLIDSPDF IASHLKRTLE TEDHIMILLR TYLRLRTVYL DAPDKVSLVN HPLRTGGFTE VFGSVNGIIG
101: LTNSPTDLAL FNPSTRKIHR LPVEPIDFFE RQITREYVFY GLGHDSVSDD YKVVRMIQSK DRGGDESFGY PFEVKVFSLK SNKWKRIDLL SEDVEILFDN
201: FYFHLLYRRG NGVLASNNLH WILIHNEGDI GMNTIIRFDL ATEELGVVNF SHDVYVKGMD IGVLGGCLCM MCYNEVRHAD VWIMREYGGE WSKFVSVPQP
301: ESVVSFEFVR PLVYSKDRRK ILLEINNGKL FWFDLASRSL ERLVIKGCEV LPCNAEIVVS SLVLGCKEKK MVQKGNKRLY AYLNFFEFLK LLMVRM

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.