CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006309.1-P	Field mustard	cytosol	96.68	95.45
CDX78642	Canola	cytosol	73.66	72.18
CDX78639	Canola	cytosol	71.1	71.28
CDX78641	Canola	cytosol	71.36	69.75
CDX78640	Canola	cytosol	69.05	69.59
CDX70626	Canola	cytosol	74.42	67.36
CDX78643	Canola	cytosol	72.12	64.98
CDX76370	Canola	cytosol	64.71	62.16
AT4G22390.1	Thale cress	cytosol	62.15	60.45
CDY27453	Canola	cytosol, mitochondrion	13.81	56.25
CDX97333	Canola	cytosol	47.31	55.22
CDY67179	Canola	cytosol	59.85	54.67
KRH36548	Soybean	cytosol, plastid	32.74	32.65
KRH11533	Soybean	cytosol	31.71	31.47
KRH01989	Soybean	cytosol	30.69	30.61
KRH51164	Soybean	cytosol	29.92	30.39
Solyc01g008660.2.1	Tomato	cytosol	25.32	28.78
CDY58343	Canola	cytosol	23.53	22.77
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	11.0	22.75
CDY08063	Canola	cytosol	23.27	22.64
CDX77477	Canola	cytosol	19.95	21.08
CDX85142	Canola	cytosol	20.46	9.74
CDX78644	Canola	plasma membrane	2.05	1.85

Protein Annotations

EnsemblPlants:CDX78638	EnsemblPlantsGene:GSBRNA2T00130056001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PFAM:PF00646	ProteinID:CDX78638
ProteinID:CDX78638.1	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EDC708
MapMan:35.1	:	:	:	:	:

Description

BnaA03g05500D

Coordinates

chrLK031815:+:1617444..1619157

Molecular Weight (calculated)

44695.4 Da

IEP (calculated)

7.248

GRAVY (calculated)

-0.032

Length

391 amino acids

Sequence
(BLAST)

001: MANLPMDTVA DIFLRLPATT LVRCRVLSKP CCSLIDSPDF IASHLKRTLE TEDHIMILLR TYLRLRTVYL DAPDKVSLVN HPLRTGGFTE VFGSVNGIIG
101: LTNSPTDLAL FNPSTRKIHR LPVEPIDFFE RQITREYVFY GLGHDSVSDD YKVVRMIQSK DRGGDESFGY PFEVKVFSLK SNKWKRIDLL SEDVEILFDN
201: FYFHLLYRRG NGVLAGNNLH WILIHNEGDI GMNTIIRFDL ATEELGVVNF SHDVYVKGMD IGVLDGCLCM MCYNEVRHAD VWIMREYGGE WSKFVSVPQP
301: ESVVSFEFVR PLVYSKDRSK ILLEINNGKL FWFDLASKSL ERLVIKGCEV LPCNAEIVVS SLVLGCKEKK MVQKGNKRLD DFLSKGFKLK L

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.