CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78642	Canola	cytosol	87.27	94.49
CDX78639	Canola	cytosol	75.46	83.59
CDX78643	Canola	cytosol	76.62	76.27
CDX78641	Canola	cytosol	70.37	76.0
CDX78640	Canola	cytosol	68.06	75.77
CDX78638	Canola	cytosol	67.36	74.42
AT4G22390.1	Thale cress	cytosol	62.27	66.92
CDX76370	Canola	cytosol	59.03	62.65
CDX97333	Canola	cytosol	42.82	55.22
CDY67179	Canola	cytosol	54.4	54.91
CDY27453	Canola	cytosol, mitochondrion	12.04	54.17
KRH36548	Soybean	cytosol, plastid	28.01	30.87
KRH11533	Soybean	cytosol	27.55	30.2
KRH01989	Soybean	cytosol	25.46	28.06
Solyc01g008660.2.1	Tomato	cytosol	22.22	27.91
KRH51164	Soybean	cytosol	24.77	27.79
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	9.95	22.75
CDY58343	Canola	cytosol	20.6	22.03
CDY08063	Canola	cytosol	20.37	21.89
CDX77477	Canola	cytosol	16.67	19.46
CDX85142	Canola	cytosol	17.82	9.38
CDX78644	Canola	plasma membrane	1.85	1.85

Protein Annotations

EnsemblPlants:CDX70626	EnsemblPlantsGene:GSBRNA2T00140475001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PFAM:PF00646	PFscan:PS50181
ProteinID:CDX70626	ProteinID:CDX70626.1	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0004EF3CB1	MapMan:35.1	:	:	:	:

Description

BnaC03g07100D

Coordinates

chrLK031791:+:1298710..1301481

Molecular Weight (calculated)

49070.9 Da

IEP (calculated)

6.072

GRAVY (calculated)

0.006

Length

432 amino acids

Sequence
(BLAST)

001: MAMPMDIVND VFFEILGLQM SCSLESSFPE KTMANMPMDI VNDVFLRLPA TTLVRCRLLS KPCLSLIDSP DFVASHLKRT LETEEHLMIL LLSHRLLRTM
101: YLDAPDKLSD VDHPLQTGGF TEVFGSVNGL IGLTNSPVDL AIFNPSTRKI HRLPIEPIDF SERFITRENV FYGLGYDSVS DDYKVVRMIQ SKYKGDGVEE
201: SFGYALEIKV FSLKSNSWKR IHLLFEVQIL FIYFYYDLLY RRGKGVLASN SLHWILPRTG GHTAFNTIIR FDLGSDDLGV LSFPNDLYLE DDMDIGVLDG
301: CLCLMCYSES SHVGVWILRE YEGEWSKFIT VPKPETVVSF EFVRPMIYSK DRSKILLEIN NGKLMWFDLE SKGFETLGIK GCEGPCTAEI VVSSLVLGCK
401: GDPRRAQEKK MMLKGNKRLG DGFLSKGFKL KL

Best Arabidopsis Sequence Match ( AT4G22390.2 )
(BLAST)

001: MAECPTDLIN EMFLRLRATT LVKCRVLSKP CFSLIDSPEF VSSHLRRRLE TGEHLMILLR GPRLLRTVEL DSPENVSDIP HPLQAGGFTE VFGSFNGVIG
101: LCNSPVDLAI FNPSTRKIHR LPIEPIDFPE RDITREYVFY GLGYDSVGDD FKVVRIVQCK LKEGKKKFPC PVEVKVFSLK KNSWKRVCLM FEFQILWISY
201: YYHLLPRRGY GVVVNNHLHW ILPRRQGVIA FNAIIKYDLA SDDIGVLSFP QELYIEDNMD IGVLDGCVCL MCYDEYSHVD VWVLKEYEDY KSWTKLYRVP
301: KPESVESVEF IRPLICSKDR SKILLEINNA ANLMWFDLES QSLTTAGIEC DSSFTADILV SSLVLGCKGD PTQAQRSKDQ KMMPKSTKRD GFLSKGFKLK
401: L

Arabidopsis Description

F-box protein At4g22390 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.