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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, extracellular, cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 4
  • cytosol 1
  • plastid 1
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, mitochondrion, plastid
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400096925 Potato cytosol 22.75 17.06
PGSC0003DMT400095263 Potato cytosol 24.34 16.91
PGSC0003DMT400031274 Potato extracellular, plasma membrane 15.34 16.11
PGSC0003DMT400009708 Potato cytosol, peroxisome, plastid 26.45 15.24
PGSC0003DMT400080239 Potato cytosol, plastid 24.87 14.73
CDX97333 Canola cytosol 25.93 14.63
PGSC0003DMT400080382 Potato golgi 27.51 13.83
PGSC0003DMT400055826 Potato cytosol, extracellular, plasma membrane 24.34 13.73
PGSC0003DMT400046369 Potato cytosol 29.1 13.61
PGSC0003DMT400031977 Potato cytosol 28.57 13.6
KRH51164 Soybean cytosol 27.51 13.51
PGSC0003DMT400009709 Potato cytosol 26.98 13.49
PGSC0003DMT400009785 Potato cytosol 26.98 13.46
KRH01989 Soybean cytosol 27.51 13.27
PGSC0003DMT400058350 Potato cytosol, extracellular, plasma membrane, plastid 25.93 13.24
KRH11533 Soybean cytosol 27.51 13.2
PGSC0003DMT400012000 Potato plastid 25.4 12.97
KRH36548 Soybean cytosol, plastid 26.45 12.76
PGSC0003DMT400015598 Potato cytosol, nucleus, peroxisome, plastid 25.93 12.25
PGSC0003DMT400076275 Potato nucleus 25.93 12.19
PGSC0003DMT400058829 Potato cytosol 23.28 12.09
PGSC0003DMT400092235 Potato cytosol 21.16 12.08
PGSC0003DMT400025788 Potato cytosol 24.87 11.99
PGSC0003DMT400034123 Potato golgi 23.28 11.99
Bra006310.1-P Field mustard cytosol 23.28 11.92
Bra018485.1-P Field mustard cytosol 25.93 11.92
PGSC0003DMT400008825 Potato extracellular, golgi, plastid 23.28 11.89
PGSC0003DMT400008824 Potato extracellular, golgi, plastid 23.28 11.89
PGSC0003DMT400076274 Potato cytosol 24.34 11.89
PGSC0003DMT400076216 Potato cytosol 24.34 11.83
PGSC0003DMT400067303 Potato extracellular 22.75 11.75
PGSC0003DMT400016504 Potato cytosol 23.81 11.66
PGSC0003DMT400094422 Potato extracellular, golgi, plastid 21.69 11.61
PGSC0003DMT400059337 Potato cytosol, plasma membrane 22.75 11.56
PGSC0003DMT400096151 Potato cytosol 24.34 11.56
PGSC0003DMT400076284 Potato cytosol 25.93 11.56
PGSC0003DMT400094202 Potato cytosol 17.46 11.5
PGSC0003DMT400045556 Potato cytosol 28.04 11.47
Bra020847.1-P Field mustard cytosol 24.34 11.39
AT4G12560.2 Thale cress cytosol 24.87 11.38
CDX78640 Canola cytosol 23.28 11.34
CDX76370 Canola cytosol 24.34 11.3
PGSC0003DMT400016057 Potato cytosol 22.22 11.26
PGSC0003DMT400096882 Potato cytosol, plasma membrane, plastid 16.4 11.23
PGSC0003DMT400085500 Potato cytosol 22.75 11.23
Bra006311.1-P Field mustard cytosol 23.28 11.22
PGSC0003DMT400035180 Potato golgi, nucleus, plastid 22.22 11.11
PGSC0003DMT400059330 Potato extracellular 22.22 11.11
CDX78639 Canola cytosol 22.75 11.03
CDX78638 Canola cytosol 22.75 11.0
CDY67179 Canola cytosol 24.87 10.98
PGSC0003DMT400090333 Potato cytosol 17.99 10.97
Bra006309.1-P Field mustard cytosol 22.75 10.86
PGSC0003DMT400055337 Potato plastid 23.28 10.84
CDX78642 Canola cytosol 22.75 10.78
PGSC0003DMT400035091 Potato mitochondrion 22.22 10.71
PGSC0003DMT400016099 Potato cytosol 20.63 10.6
PGSC0003DMT400059327 Potato cytosol 20.63 10.57
Bra006312.1-P Field mustard cytosol 22.22 10.5
CDX78641 Canola cytosol 22.22 10.5
PGSC0003DMT400059334 Potato plastid 19.58 10.28
PGSC0003DMT400080369 Potato nucleus 21.69 10.28
PGSC0003DMT400053926 Potato cytosol 14.29 10.27
AT4G22390.1 Thale cress cytosol 21.69 10.2
PGSC0003DMT400016096 Potato cytosol 11.11 10.14
PGSC0003DMT400015653 Potato cytosol, plastid 25.93 9.96
CDX70626 Canola cytosol 22.75 9.95
CDX78643 Canola cytosol 22.75 9.91
PGSC0003DMT400090382 Potato cytosol 20.11 9.9
PGSC0003DMT400006240 Potato mitochondrion 16.93 9.76
PGSC0003DMT400093810 Potato plastid 14.29 9.64
PGSC0003DMT400053922 Potato extracellular, golgi 20.11 9.09
PGSC0003DMT400059329 Potato vacuole 19.05 8.98
PGSC0003DMT400080292 Potato cytosol 7.94 7.58
PGSC0003DMT400088797 Potato cytosol 8.47 6.5
PGSC0003DMT400097507 Potato cytosol 7.41 5.88
Bra006313.1-P Field mustard plasma membrane 21.69 4.83
PGSC0003DMT400080293 Potato nucleus 5.82 4.33
CDX78644 Canola plasma membrane 0.0 0.0
PGSC0003DMT400030295 Potato cytosol 0.0 0.0
PGSC0003DMT400076282 Potato nucleus 0.0 0.0
Protein Annotations
EnsemblPlants:PGSC0003DMT400054287EnsemblPlantsGene:PGSC0003DMG401021060GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:IPR001810PANTHER:PTHR44355PFAM:PF00646PGSC:PGSC0003DMG401021060
SUPFAM:SSF81383TIGRFAMs:TIGR01640UniParc:UPI0002951A13UniProt:M1BW23MapMan:35.2:
Description
Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG401021060]
Coordinates
chr7:+:23980053..23983603
Molecular Weight (calculated)
21677.3 Da
IEP (calculated)
9.692
GRAVY (calculated)
-0.049
Length
189 amino acids
Sequence
(BLAST)
001: MKVVFGVFWS FEYRNGISPI TIQKLSRPFY TMSTFPLDVV EEILRRVPVY SVLRCRKVDY YGYGKRYFYS LPFDFLNSRV VTPKELTNPL MSSQFNTNIL
101: GSCNGLLLIS NTVDEIALWN PSTGKYKKLP LLGIAKNDVR VNFGFGYDII NGDYKVVRIV PFPGSEKGSF QSHVMVYSLK SSCWRGVDE
Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)
001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
Arabidopsis Description
CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.