Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018485.1-P | Field mustard | cytosol | 84.26 | 84.67 |
| CDY67179 | Canola | cytosol | 84.5 | 81.54 |
| CDX97333 | Canola | cytosol | 61.99 | 76.42 |
| AT4G22390.1 | Thale cress | cytosol | 56.42 | 57.96 |
| KRH36548 | Soybean | cytosol, plastid | 34.38 | 36.22 |
| Solyc01g008660.2.1 | Tomato | cytosol | 28.33 | 34.01 |
| KRH11533 | Soybean | cytosol | 32.45 | 34.01 |
| KRH51164 | Soybean | cytosol | 31.23 | 33.51 |
| KRH01989 | Soybean | cytosol | 30.99 | 32.65 |
| PGSC0003DMT400054287 | Potato | cytosol, extracellular, mitochondrion, plastid | 11.38 | 24.87 |
| AT3G06240.1 | Thale cress | cytosol | 25.42 | 24.59 |
| AT3G23880.1 | Thale cress | cytosol | 18.64 | 21.15 |
Protein Annotations
| MapMan:35.1 | EntrezGene:826869 | UniProt:A0A178UW44 | ProteinID:AEE83147.1 | ProteinID:AEE83148.1 | EMBL:AK229339 |
| ProteinID:ANM66283.1 | ArrayExpress:AT4G12560 | EnsemblPlantsGene:AT4G12560 | RefSeq:AT4G12560 | TAIR:AT4G12560 | RefSeq:AT4G12560-TAIR-G |
| EnsemblPlants:AT4G12560.2 | TAIR:AT4G12560.2 | Unigene:At.33465 | ProteinID:CAB41726.1 | ProteinID:CAB78299.1 | Symbol:CPR30 |
| InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008219 | GO:GO:0009056 | GO:GO:0009626 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031146 | GO:GO:0031348 | GO:GO:0042177 | InterPro:IPR001810 |
| RefSeq:NP_001078377.1 | RefSeq:NP_001328191.1 | RefSeq:NP_192993.2 | ProteinID:OAO98078.1 | PFAM:PF00646 | PFAM:PF07734 |
| PO:PO:0000003 | PO:PO:0000014 | PO:PO:0000293 | PO:PO:0006504 | PO:PO:0007131 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009047 | PO:PO:0009049 | PO:PO:0020138 | PFscan:PS50181 | PANTHER:PTHR44355 |
| PANTHER:PTHR44355:SF1 | UniProt:Q9SU30 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0000196C36 |
| SEG:seg | : | : | : | : | : |
Description
CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
Coordinates
chr4:+:7441681..7443775
Molecular Weight (calculated)
47261.3 Da
IEP (calculated)
8.785
GRAVY (calculated)
-0.169
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.