CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11533	Soybean	cytosol	87.76	87.31
KRH51164	Soybean	cytosol	55.1	56.1
KRH01989	Soybean	cytosol	55.61	55.61
AT4G12560.2	Thale cress	cytosol	36.22	34.38
Solyc01g008660.2.1	Tomato	cytosol	29.59	33.72
CDX76370	Canola	cytosol	34.95	33.66
CDX78638	Canola	cytosol	32.65	32.74
Bra018485.1-P	Field mustard	cytosol	34.18	32.6
Bra020847.1-P	Field mustard	cytosol	32.91	31.93
CDY67179	Canola	cytosol	34.44	31.54
Bra006310.1-P	Field mustard	cytosol	29.34	31.17
Bra006311.1-P	Field mustard	cytosol	30.87	30.87
CDX78640	Canola	cytosol	30.1	30.41
Bra006309.1-P	Field mustard	cytosol	30.61	30.3
CDX78639	Canola	cytosol	30.1	30.26
CDX78642	Canola	cytosol	30.61	30.08
AT4G22390.1	Thale cress	cytosol	30.61	29.85
CDX97333	Canola	cytosol	25.26	29.55
CDX78641	Canola	cytosol	29.34	28.75
KRH35044	Soybean	cytosol, extracellular, golgi	26.02	28.41
Bra006312.1-P	Field mustard	cytosol	28.83	28.25
CDX70626	Canola	cytosol	30.87	28.01
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	12.76	26.45
KRH11340	Soybean	cytosol, peroxisome, plastid	25.51	26.11
CDX78643	Canola	cytosol	28.83	26.04
KRH20939	Soybean	cytosol, mitochondrion	26.02	25.12
KRH11341	Soybean	cytosol, plastid	25.0	24.94
KRH72048	Soybean	cytosol	21.94	24.36
KRH35047	Soybean	cytosol, peroxisome, plastid	22.7	22.65
Bra006313.1-P	Field mustard	plasma membrane	29.59	13.66
CDX78644	Canola	plasma membrane	1.28	1.15

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100812846	MapMan:35.1	EMBL:ACUP02005380	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_09G010600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
UniProt:I1L001	InterPro:IPR001810	InterPro:IPR015915	EnsemblPlants:KRH36548	ProteinID:KRH36548	ProteinID:KRH36548.1
ProteinID:KRH36549.1	InterPro:Kelch-typ_b-propeller	PFAM:PF00646	PFAM:PF07734	PFscan:PS50181	PANTHER:PTHR31790
PANTHER:PTHR31790:SF34	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002337BC9
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:819304..822734

Molecular Weight (calculated)

44856.3 Da

IEP (calculated)

8.537

GRAVY (calculated)

-0.163

Length

392 amino acids

Sequence
(BLAST)

001: MSDHLPREVV TDILSRLPAK SLLRFRSTSK SWKSLIDSQH FNSVHLSRSL SLTSNTTLIL RLDSDLYQTN FPTLDPPLFL NHPLMCYSNN ITLLGSCNGL
101: LCISNVADDI AFWNPSLRQH RILPSLPLPR RRLHPDTTLF AARVYGFGFD HTSPDYKLVR ISYFVDLQDR SFDSQVKLYT LRANAWKTLP SMPYALCCAR
201: TMGVFVGNSL HWVVTRKLEP DQPDLIVAFD LTHEIFTELP LPDTGGVGGG FEIDVALLGD SLCMTVNFHN SKMDVWVMRE YNRGDSWCKL FTLEESRELR
301: SFKCLRPLGY SSDGNKVLLE HDRKRLCWYD LGKKEVTLVR IQGLPNLNEA MICLGTLVTP YFLPRQICRK SPTLGCQRRR DDFLSQGFKL TL

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.