CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27453	Canola	cytosol, mitochondrion	23.1	97.92
Bra020847.1-P	Field mustard	cytosol	97.05	97.77
CDY67179	Canola	cytosol	71.99	68.46
CDX97333	Canola	cytosol	54.3	65.97
CDX78642	Canola	cytosol	64.13	65.41
CDX78638	Canola	cytosol	62.16	64.71
CDX78640	Canola	cytosol	61.18	64.18
CDX78639	Canola	cytosol	59.71	62.31
CDX78641	Canola	cytosol	60.2	61.25
CDX70626	Canola	cytosol	62.65	59.03
CDX78643	Canola	cytosol	60.44	56.68
KRH36548	Soybean	cytosol, plastid	33.66	34.95
KRH11533	Soybean	cytosol	33.17	34.26
Solyc01g008660.2.1	Tomato	cytosol	27.52	32.56
KRH51164	Soybean	cytosol	29.48	31.17
KRH01989	Soybean	cytosol	29.98	31.12
CDY08063	Canola	cytosol	24.08	24.38
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	11.3	24.34
CDY58343	Canola	cytosol	24.08	24.26
CDX77477	Canola	cytosol	19.66	21.62
CDX85142	Canola	cytosol	20.39	10.11
CDX78644	Canola	plasma membrane	1.97	1.85

Protein Annotations

EnsemblPlants:CDX76370	EnsemblPlantsGene:GSBRNA2T00126758001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	ProteinID:CDX76370
ProteinID:CDX76370.1	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EDDEBE
MapMan:35.1	:	:	:	:	:

Description

BnaA08g10300D

Coordinates

chrLK031807:+:778545..780228

Molecular Weight (calculated)

46749.0 Da

IEP (calculated)

8.527

GRAVY (calculated)

-0.100

Length

407 amino acids

Sequence
(BLAST)

001: MADMPMDIIT DLFLRLPAST LVRCRVLSKP CFSLIDSPDF ISSHLHHTLQ TGDHLMILLR GPRLLVTVDL DSPDKVSDVE HPLKAGGLTE VFGSCNGLIG
101: LSNSPTDMAL FNPSTRQIHR LPAEPVDFPE GSRTRGYVFY GFGYDSVNED YKVVRMIQCK GGAADELVFG FPYEVKVFSL KMNTWKRVKR VLPAIQLLFY
201: FYYHLLYRRG YGVLACNSLH WVLPRRPGLI AFNTIIRFDL AVEEFEILTF PESLAHENID IGVLEGCLCL MCNREFTSVD VWVMKEYKVE GSWSKVFSVP
301: KPKSVESFDF MRPLIYSKDR RKVLIEVNNA KLLWFDLESK RLRTLRIKDC DSSYSAELLV SSLVLGCKGD PSEAKRRRER RALEDKMMQQ RSKRWDDFLS
401: KGFKLVL

Best Arabidopsis Sequence Match ( AT4G12560.1 )
(BLAST)

001: MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG
101: LSNSPTDLAV FNPSTRQIHR LPPSSIDLPD GSSTRGYVFY GLGYDSVSDD YKVVRMVQFK IDSEDELGCS FPYEVKVFSL KKNSWKRIES VASSIQLLFY
201: FYYHLLYRRG YGVLAGNSLH WVLPRRPGLI AFNLIVRFDL ALEEFEIVRF PEAVANGNVD IQMDIGVLDG CLCLMCNYDQ SYVDVWMMKE YNVRDSWTKV
301: FTVQKPKSVK SFSYMRPLVY SKDKKKVLLE LNNTKLVWFD LESKKMSTLR IKDCPSSYSA ELVVSSLVLG CKGDLNNIKY RKEQQAKEAR EAKIMQNTKR
401: RDDFLSKGFK LVL

Arabidopsis Description

CPR1F-box protein CPR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.