CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 7
endoplasmic reticulum 5
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006313.1-P	Field mustard	plasma membrane	99.31	50.65
CDY27453	Canola	cytosol, mitochondrion	1.62	7.29
CDX78643	Canola	cytosol	3.46	3.46
CDX78641	Canola	cytosol	2.08	2.25
CDX78638	Canola	cytosol	1.85	2.05
AT4G22390.1	Thale cress	cytosol	1.85	1.99
CDX76370	Canola	cytosol	1.85	1.97
CDX70626	Canola	cytosol	1.85	1.85
KRH01989	Soybean	cytosol	1.62	1.79
CDX78642	Canola	cytosol	1.62	1.75
KRH51164	Soybean	cytosol	1.39	1.56
CDX78640	Canola	cytosol	1.15	1.29
KRH36548	Soybean	cytosol, plastid	1.15	1.28
KRH11533	Soybean	cytosol	1.15	1.27
CDX97333	Canola	cytosol	0.92	1.19
CDY67179	Canola	cytosol	0.92	0.93
Solyc01g008660.2.1	Tomato	cytosol	0.69	0.87
CDX78639	Canola	cytosol	0.46	0.51
CDY58343	Canola	cytosol	0.0	0.0
CDY08063	Canola	cytosol	0.0	0.0
CDX85142	Canola	cytosol	0.0	0.0
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	0.0	0.0
CDX77477	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:21.1.2.2	GO:A0A078CRG7	EnsemblPlants:CDX78644	ProteinID:CDX78644	ProteinID:CDX78644.1	InterPro:COBRA_pln
GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020	GO:GO:0016043
GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	EnsemblPlantsGene:GSBRNA2T00130062001	PFAM:PD140986	PFAM:PF04833
PIRSF:PIRSF038122	PANTHER:PTHR31673	PANTHER:PTHR31673:SF2	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EEABF0
SEG:seg	:	:	:	:	:

Description

BnaA03g05560D

Coordinates

chrLK031815:+:1631169..1633525

Molecular Weight (calculated)

48600.6 Da

IEP (calculated)

9.110

GRAVY (calculated)

-0.130

Length

433 amino acids

Sequence
(BLAST)

001: MRLLFCFCFF FMIIFNASAY DPLDPNGNIT IKWDIMSWTA DGYVATVTMN NFQIYRHIQS PGWTLGWAWA KKEVIWSMVG AQATEQGDCS KFKGNVPHCC
101: KKTPTVVDLL PGVPYNQQIS NCCKGGVVGA WGQDPSSAVS QFQVSVGLAG TTNKTVKLPK NFTLLGPGPG YTCGPAKIVP STVFLTTDKR RKTQALMTWN
201: VTCTYSQFLA RKHPSCCVSF SSFYNDTITP CPSCACGCEN KRSCVKADSK ILTKKGLNTP RKDNAPLLQC THHMCPIRVH WHVKTNYKDY WRVKIAITNF
301: NYRMNHTLWT LAVQHPNLNN VTQVFSFDYK SVAPYGSIND TGMFFGTKFY NDLLMEAGPS GNVQSEVLLQ KDQKTFTFKQ GWAFPRKVYF NGDECMLPSP
401: DSYPFLPNSA RGSLASLWTL SLTILVLVFI SIW

Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)

001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W

Arabidopsis Description

COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [extracellular,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.