Factsheet for Bra006313.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
plasma membrane 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78644	Canola	plasma membrane	50.65	99.31
CDX78643	Canola	cytosol	47.0	91.94
Bra006310.1-P	Field mustard	cytosol	34.51	79.4
Bra006311.1-P	Field mustard	cytosol	35.57	77.04
Bra006312.1-P	Field mustard	cytosol	35.92	76.25
Bra006309.1-P	Field mustard	cytosol	33.22	71.21
AT4G22390.1	Thale cress	cytosol	30.27	63.93
Bra020847.1-P	Field mustard	cytosol	28.86	60.64
Bra018485.1-P	Field mustard	cytosol	27.09	55.96
Solyc01g008660.2.1	Tomato	cytosol	12.01	29.65
KRH36548	Soybean	cytosol, plastid	13.66	29.59
KRH11533	Soybean	cytosol	13.43	28.93
KRH01989	Soybean	cytosol	12.84	27.81
KRH51164	Soybean	cytosol	12.25	27.01
Bra001187.1-P	Field mustard	cytosol	7.3	23.4
PGSC0003DMT400054287	Potato	cytosol, extracellular, mitochondrion, plastid	4.83	21.69
Bra014991.1-P	Field mustard	cytosol	8.72	20.0

Protein Annotations

MapMan:21.1.2.2	EnsemblPlantsGene:Bra006313	EnsemblPlants:Bra006313.1	EnsemblPlants:Bra006313.1-P	InterPro:COBRA_pln	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:IPR001810	UniProt:M4CQ24	PFAM:PD140986
PFAM:PF00646	PFAM:PF04833	PFscan:PS50181	PANTHER:PTHR31673	PANTHER:PTHR31673:SF2	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	TMHMM:TMhelix	UniParc:UPI000253FC26	SEG:seg	:

Description

AT5G15630 (E=2e-244) COBL4, IRX6 | IRX6

Coordinates

chrA03:+:2959116..2964486

Molecular Weight (calculated)

96153.6 Da

IEP (calculated)

9.350

GRAVY (calculated)

-0.127

Length

849 amino acids

Sequence
(BLAST)

001: MANMPMDIVN DVFLRLPATT LVRCRLLSKP CFSLIDSPDF IASHLKRVLE TEEHLMIILR SPRLLRTVYL DAPDKISDVD HPLQAGGFTE VFGSVNGVIG
101: LTNSPVDLAI FNPSSRKIHR LPIEPIDFPE HYISRENVFY GLGYDSVSDD YKVVRMVQST HKGHGESFGR AFEIKVFSLK SNKWKRIHLL FDVQILFTKV
201: YYRLLYRRGN GVLASNRLHW ILPRSRGYIA WNTVIRFDLA SDDLGILRYP LELLHEDGMG IGVLDGCLCL MCYSESSHVG VWILREYRGK WSKFISVPKP
301: ETAVSFEFVR PLIYSKDRSK ILLEINNGKL FWFDLASKSF ETLEIKGCEG LPCNMEIVVS SLVLGCKGDP RRAQEKKMGN KRWGGWFSVQ GIQAQVMSKA
401: GELQSPKLYK RNFYRKMRLL FCFCFFFMII FNASAYDPLD PNGNITIKWD IMSWTADGYV ATVTMNNFQI YRHIQSPGWT LGWAWAKKEV IWSMVGAQAT
501: EQGDCSKFKG NVPHCCKKTP TVVDLLPGVP YNQQISNCCK GGVVGAWGQD PSSAVSQFQV SVGLAGTTNK TVKLPKNFTL LGPGPGYTCG PAKIVPSTVF
601: LTTDKRRKTQ ALMTWNVTCT YSQFLARKHP SCCVSFSSFY NDTITPCPSC ACGCENKRSC VKADSKILTK KGLNTPRKDN APLLQCTHHM CPIRVHWHVK
701: TNYKDYWRVK IAITNFNYRM NHTLWTLAVQ HPNLNNVTQV FSFDYKSVAP YGSINDTGMF FGTKFYNDLL MEAGPSGNVQ SEVLLQKDQK TFTFKQGWAF
801: PRKVYFNGDE CMLPSPDSYP FLPNSARGSL ASLSTLSFTI LVLVFISVW

Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)

001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W

Arabidopsis Description

COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.